Thalassiosira pseudonana: THAPSDRAFT_26398
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Entry
THAPSDRAFT_26398 CDS
T01078
Name
(RefSeq) predicted protein
KO
K05610
ubiquitin carboxyl-terminal hydrolase L5 [EC:
3.4.19.12
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
THAPSDRAFT_26398
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tps01002
]
THAPSDRAFT_26398
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tps04121
]
THAPSDRAFT_26398
Enzymes [BR:
tps01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
THAPSDRAFT_26398
Peptidases and inhibitors [BR:
tps01002
]
Cysteine peptidases
Family C12: ubiquitin C-terminal hydrolase family
THAPSDRAFT_26398
Ubiquitin system [BR:
tps04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UCH
THAPSDRAFT_26398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C12
UCH_C
DUF2895
Motif
Other DBs
NCBI-GeneID:
7448016
NCBI-ProteinID:
XP_002293261
JGI:
26398
UniProt:
B8CAQ2
LinkDB
All DBs
Position
12:complement(905964..907085)
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AA seq
349 aa
AA seq
DB search
MSDGNNDWCTIESDPGVFTSLIESFGVKNVELSELWSLDDESLLSLTNPMEGVENASVHG
LIFLFKWQSSHAGNTNDNSPEEETGKALVGEDVPNDLFFAKQVTHNACATQAILSVLRLV
LGSTLSNFKSFTSHFPPDLRGEAIGSSDEIRTAHNSFGRAEDAFLSDPSKPKRIATDDDD
VFHFVAYVPNDKDECVYELDGLKEGPIRVGSYKKEGEDGNSTLQWVQVARDSIQNRLSHY
SPTEIKFNLMAMVQDRRTYLTERLNSLAAIGIEESDPAMLTVRSELHLEEEKRARWEIEN
ERRRFNYLPFCVELLRSLAGSGKFESLVDKAKTSAGEKRKRAEAWKKQG
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacggcaacaacgactggtgcacaattgagagcgatccaggagtattcacttct
ctcattgagtcctttggagtcaaaaacgtggagctgtccgagctttggtcactcgatgat
gaatctttactctccctcaccaacccaatggaaggggtcgaaaacgcctctgtgcatgga
ttgatctttttgttcaagtggcagagttctcacgcaggaaataccaacgacaacagcccg
gaggaagagacggggaaggcacttgttggagaggatgtacccaatgacttattctttgcc
aagcaggttactcacaatgcttgtgcgacgcaggctattctgagcgtattgcgtctcgtg
ttgggatccactctatccaacttcaaatccttcacttcgcactttccacctgatttacgt
ggagaggcaattggatctagtgatgagattcgtactgctcacaactcgtttggaagggcg
gaggatgcctttttgagtgatccgtccaagccaaagaggattgcaaccgatgatgatgac
gtgtttcacttcgtggcttatgttccaaatgataaggatgaatgtgtgtacgaacttgat
ggattaaaagagggtcctattcgtgttggatcatacaaaaaggagggagaggatggaaac
tcaacattgcaatgggtgcaagtggcaagggactccattcagaatcgactctctcactac
tctcccactgagatcaaattcaatctcatggccatggtacaagatcgtcgcacctacctc
actgaacgattgaactcccttgccgccattggcattgaagagagtgatccagccatgttg
actgttcgttcggaactacacttggaggaagaaaagcgagccagatgggagattgagaat
gaacgtaggaggttcaactatctgccattttgtgtggagttgttgcgatcattggcgggg
agtggcaagtttgagagtttggtggacaaggcaaagactagtgcaggggagaagaggaag
agggccgaggcttggaagaagcagggttga
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