Thalassiosira pseudonana: THAPSDRAFT_268404
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Entry
THAPSDRAFT_268404 CDS
T01078
Symbol
Lig1
Name
(RefSeq) ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03030
DNA replication
tps03410
Base excision repair
tps03420
Nucleotide excision repair
tps03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THAPSDRAFT_268404 (Lig1)
03410 Base excision repair
THAPSDRAFT_268404 (Lig1)
03420 Nucleotide excision repair
THAPSDRAFT_268404 (Lig1)
03430 Mismatch repair
THAPSDRAFT_268404 (Lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tps03032
]
THAPSDRAFT_268404 (Lig1)
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_268404 (Lig1)
Enzymes [BR:
tps01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
THAPSDRAFT_268404 (Lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
THAPSDRAFT_268404 (Lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
THAPSDRAFT_268404 (Lig1)
DNA replication proteins [BR:
tps03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
THAPSDRAFT_268404 (Lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
THAPSDRAFT_268404 (Lig1)
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
THAPSDRAFT_268404 (Lig1)
NER (nucleotide excision repair)
Other NER factors
THAPSDRAFT_268404 (Lig1)
MMR (mismatch excision repair)
Other MMR factors
THAPSDRAFT_268404 (Lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
7442422
NCBI-ProteinID:
XP_002287605
JGI:
268404
UniProt:
B8BW47
LinkDB
All DBs
Position
2:2653415..2657164
Genome browser
AA seq
633 aa
AA seq
DB search
MTELFRMVLIRDDALRSDLYPLLYLASNSVAPSYECVELGVGDSILVKAIGEASGTNPQM
IKKKYEKEGDLGTVAQTSKGKQKTLIGGPKRLDVREVLKVFREIATTSGSQSQKWKVDKI
KGLLVRAKGSEAKYIIRGLQGKLRIGLAQSSVLASLSHAIVLTKPKDVVPLTEERLKEIR
SIDADEKGAYPDFARKLCAENLPLDVKLETSVAIVKKAYSEVPSFDSLLDALLSAPLQEM
HKACNLTPGIPVEPMLAKPTKSVLEVLKRLNGARFTCEYKYDGERAQVHMTPDGKTKVFS
RSLLNTSEKFPEVPLYVQEACKETSVTSFVLDTEVVAFNRVTQQFVPFQVLSTRKKTEES
AEDAKVKVIVQAFDLMYLNGESLLDRPLAERRELMRKNFIPVPGKFQFATSLDHTEDGDT
AVVEEFLDNAVKGQCEGLMVKTLDVNAAYEPSRRSLNWLKLKKDYLEGLGDSVDLVPLGA
YHGRGKRTGVYGAYLLAVYEEDTEEFQSVCKIGTGFSEEDLKELAASLKPHIIPEKSSQY
VVSDSLECDVWFDAVQVWEVKAADLSKSSTHKGAVDKTGESGRGIGLRFPRFERVRPDKK
PEDATSADQILDMYYNQDSIVNTGDGGIDDDGI
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgactgagttgtttcgaatggtgttgattagggatgacgcactacgatcagacctctac
cccctcctctacctagcatccaactccgtagccccctcctacgaatgtgtcgaacttggc
gtaggcgactccatcctcgtcaaagccattggagaagcctcgggtacaaacccccaaatg
ataaagaaaaagtatgagaaggaaggtgatttgggaacggtggctcaaactagtaagggg
aagcaaaagacgttgatcggtggaccaaagaggttggatgttcgagaggtgttgaaggtg
tttcgtgagattgccaccacgtctggatctcaatctcagaaatggaaagttgacaaaatc
aaaggtctcctagtccgtgccaaaggctctgaggccaagtacatcattcgtgggttgcag
ggaaagttgcgtattggattagctcaatcgtccgtgttggcatcattgtctcatgctatt
gtcttgacgaagcctaaggatgtggtgccgttgacggaggagaggttgaaggagattcgt
tccattgatgctgatgagaaaggagcataccccgattttgctcgcaagctctgtgccgaa
aatctcccactcgacgtcaaactggagacttccgtggcaatcgtcaaaaaggcatactcg
gaggtgccatcctttgattcgctccttgatgcattgctctcagcaccattgcaagagatg
cacaaggcatgcaatctcactcctggtattccggtggagccaatgcttgcaaagccgacc
aagtcggtgttggaagtgttgaagaggttgaatggtgcgaggtttacttgcgagtacaaa
tatgatggagaacgtgcacaggttcacatgactccggatggaaagacaaaggtcttctct
cgttcattattgaacaccagtgagaagttccctgaggttccactctacgtccaagaagca
tgcaaggaaacgtccgtaaccagttttgttctcgatacagaggtagtagcattcaaccgt
gtaactcagcagtttgttcccttccaagttctttccacgaggaagaagactgaggagtca
gcagaggatgccaaagtgaaggtcatcgtgcaggcatttgatttgatgtacttgaatgga
gagtctttgttggacagaccacttgcggagaggagggagttgatgagaaaaaactttatt
cctgttccggggaaattccagtttgctacgtcgttggatcacactgaggacggtgacacg
gcagtagttgaggagttccttgataatgccgtcaaaggacagtgtgagggactgatggtc
aagactctcgatgtcaatgcagcatacgaaccaagtcgtcgttctctcaattggctgaag
ttgaaaaaggattacctcgaaggactcggagattctgtggatttggtgccattaggagct
taccacggcaggggtaaacgtaccggagtgtacggtgcctatctcctcgcagtttacgaa
gaagacacggaggaattccaaagcgtatgcaagattggaactggattctcggaggaagat
ttgaaggaacttgccgcttctctcaaaccccacatcattccagagaagagttcccagtac
gtcgtgtctgattctttggaatgtgacgtttggttcgatgcagtccaggtgtgggaagtg
aaggccgccgatctttccaagtcttcgactcataagggagccgtggataagactggagag
agtggaaggggtattgggttgcgtttccctcgatttgaacgtgttcgtcctgacaagaag
ccagaggatgcgacttctgcggatcagattttggacatgtactacaatcaggatagtatt
gtgaacactggagatggaggaatagatgatgatggaatatga
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