Thalassiosira pseudonana: THAPSDRAFT_268735
Help
Entry
THAPSDRAFT_268735 CDS
T01078
Symbol
GPB1
Name
(RefSeq) heterotrimeric G protein beta subunit 1
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
tps
Thalassiosira pseudonana
Pathway
tps03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
THAPSDRAFT_268735 (GPB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tps03009
]
THAPSDRAFT_268735 (GPB1)
Ribosome biogenesis [BR:
tps03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
THAPSDRAFT_268735 (GPB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Utp13
ANAPC4_WD40
NBCH_WD40
WDR54
UTP15_C
RPN1_RPN2_N
Motif
Other DBs
NCBI-GeneID:
7443711
NCBI-ProteinID:
XP_002289885
JGI:
268735
UniProt:
B8BZX6
LinkDB
All DBs
Position
4:complement(1595683..1599608)
Genome browser
AA seq
1059 aa
AA seq
DB search
MARQSKKKAPQPKEGPSSSENDDASASSDGIEEGSSSNNEKEQDDADLQSKGSNSDSGNS
ESDNDVGNNMELESPTKEQAETMEEDDDEEMDDGSSSDDEQEANNNTPAASAPPPISKSW
TTLTTHSPCYTGGTVAFSHSPTSINSIANTNITNSGETPHHEQQHFILAQRGGDVSIIEA
STGLLVRTIHDEESMDAEAITAFALSPNNKEVVVVTRGHLVRRYSLVDGVVSISFGKSGH
TLPVTNVAFHESGIFFATGSVEGLVKVWDGRNGFATHALYPTSSGGASSKGRYAVTCLQW
KPTATSLILAIGREDGSVSIHDLLLNTHDSKKASLPVAVMRDHVSAVTCVAWSEGVGGGL
FFSSGRDSVINTWLSTKVTYLRIRTLPVYEQVESMILLSRRFRPVSETKEQQEVLDRKDV
VLATCGTKGIIRLWKASPTGKEGAHSISDLSPLASQSEQDAFGEENGGYTSLHLTSLSTT
HLSPLLVAVDAEHNMTFVKIGWKDSGLGFSTDRTIVGHNGEILDLAVIPPGTSPNTNDKH
TIAVATNSSQVRIFGLADAKKDELGMLDGHSAIVLAIDASPCGRYLATAGKDKTMRVWHI
ASQKCVGVATGHTEAVGSVALSNKIGSGAFVVTASKDRTLKVWPLAGSATMNKAARSGDE
LTLRARLSARAHEKDINIVSVAPNDSLIATGSQDKTVKLWRSTDLALHGTLKGHKRGVWD
CQFSPHDRVLVTASGDKTVKLWSIADCSCVRTFQGHMAGVLRVRFLTTGLQLVSSGSDGL
VKLWTIRTNECESTIDAHDDKIWALDLSPCGTALFSGGADSKIAVWRDTTKERDDASREA
EEQNIFMEQKLSNHLRHKQYEEALEIALELDKPHQVLRVLTEIVEKDTKSNRGVETLQKH
AVKWPLNRLTQILRYCREWNTRARNSHVAMLVVKAVVTTIPAAKLASYEGIPEILAGIAP
YAERHFDRLDGMVGNSYLLDFSLFSMGSLHGDNDETYGNWLDRSRYVLPPKVIDGRIQVG
GSLVVGAKQDKDSDDDSSSDSSVVTIGDSDTSDDDSDSN
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atggcacgtcaatctaagaagaaggctcctcagccaaaggaaggccccagctcttcggaa
aacgatgatgcctctgcttcatctgatgggatcgaggagggcagcagcagcaataacgaa
aaagagcaagatgatgccgatttgcaaagcaagggtagcaatagtgacagtggaaattca
gagagtgacaatgatgtaggcaataacatggagttagaatcgccaactaaagaacaagca
gagacaatggaagaagacgacgatgaggagatggatgatgggtcatcatccgacgatgaa
caagaggcaaacaacaacacaccagcagcatccgctccgccacctatctccaaatcatgg
accactctcacaacgcacagcccatgctacacaggcggcacggttgccttttcccactct
cccacatcgatcaacagcatcgcaaacacaaacatcaccaacagtggagagactccccat
cacgaacaacagcactttatacttgctcaacgaggaggcgacgtttcaatcattgaagca
tctactggattattggtcaggacgattcatgacgaggagtcaatggacgcagaggccatc
actgcctttgcattgtcacccaataacaaagaggtggttgtggttacgaggggacatttg
gttaggaggtacagtttggtggatggcgtagtatcaatttcgtttggcaaatcaggccat
actctaccggtaacaaatgttgcctttcacgagtctggtatcttcttcgcgacgggttca
gttgagggcttggtcaaggtgtgggatggaagaaacggatttgcaactcatgcactgtac
ccaacctcttcgggaggtgcttccagtaagggtcgatatgcagtgacttgtcttcaatgg
aaacctactgctacatcacttattcttgccatcggtcgtgaggatggatccgtctcaatt
catgatctgttgttgaatactcacgatagtaagaaagcatcactgccagtagctgtgatg
agggatcatgtgagtgctgttacgtgcgtcgcttggtctgagggcgttggtggggggttg
ttcttttcgtctggaagagattcagtcatcaatacttggttgtctaccaaagtgacgtat
cttcgcatccgaacgttgccagtgtatgagcaagtggaaagtatgatattgttgtctcgg
agattccgccctgtctctgaaacgaaggagcagcaggaagtccttgatcgtaaagatgta
gtgctggccacgtgcggtacaaagggaatcatccgtctatggaaagcatcacccactggg
aaggagggggctcattcaatatcagacttgtcgcctctggcttcgcagagtgaacaagat
gcatttggggaggagaacggtggatatacttcgcttcacttgacgagtttgtctactact
catttgagtccacttcttgttgctgtagatgccgaacataacatgacgtttgtaaagatt
ggatggaaagatagcggccttgggttctccacggatcgaacaattgttgggcacaatgga
gaaatcctcgatcttgcagtgattcctcctggtacttcgcccaataccaatgacaaacac
acaatcgcagttgccacaaatagctctcaggttcgcatctttggtcttgccgatgcaaag
aaggatgagcttggaatgctcgacgggcactcagccattgtcttggctattgatgccagt
ccttgtggtcgataccttgccactgctgggaaagataaaacaatgcgagtatggcacatt
gcatctcagaaatgtgttggcgtggctacaggacataccgaggcagtaggatcggtagca
ttgtccaataagattggctctggtgcattcgtagttactgcgagtaaggataggactttg
aaggtttggcctcttgctggatctgcaacgatgaacaaagcagcgagaagcggtgatgag
ttgacattgcgtgctagattaagtgcacgtgctcacgaaaaggatattaacatcgtgtca
gttgctccaaacgactctctaattgcaacgggatctcaggacaaaacagtcaagctttgg
cgttccactgatcttgcattgcacggtactctcaaaggtcataagcgaggagtatgggac
tgccaatttagtcctcatgatcgtgttttggtaacagcaagtggagacaagacagtgaag
ctttggtcaattgccgactgcagttgtgttcggacctttcagggacatatggcaggagtt
cttcgggttagattcttgacgactggattgcaattggtttcttcgggatcggatggcttg
gtgaagctatggacaattcgaacgaatgagtgtgaaagcacaatcgacgctcatgatgac
aagatctgggctcttgacttatctccttgcggaacggcactgttcagcggtggtgcagat
tcgaagattgccgtatggcgtgacacaacgaaagaacgagacgatgcctcgagagaggcc
gaggagcaaaacattttcatggagcagaagctgtccaatcatttgcgacacaagcagtac
gaagaagcacttgaaattgcattggagctggacaagccacatcaggttttgagggtcctg
acggagatcgtagaaaaggataccaaaagcaaccgtggagtggagactcttcagaagcac
gcagtgaagtggccgttgaatcgtcttactcaaatattgcgttattgccgagagtggaac
actcgagctaggaactcgcacgtagctatgctcgttgtaaaggcggtggtgacgacgata
cctgctgcaaagctggcctcgtacgaggggattcctgagatactagctggtattgctccc
tatgctgagcgacattttgatcgccttgacggaatggtgggaaactcttatctgttggac
ttttctctgttttcaatgggtagtcttcatggggacaatgatgaaacctacggaaactgg
cttgacaggagtagatacgttctaccaccaaaagttattgacggcaggattcaggttgga
ggctctcttgttgttggggcgaaacaagacaaagacagcgatgatgattccagctctgat
agcagtgttgttactatcggtgacagcgataccagtgatgatgatagtgatagcaattag
DBGET
integrated database retrieval system
