Thalassiosira pseudonana: THAPSDRAFT_32098
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Entry
THAPSDRAFT_32098 CDS
T01078
Name
(RefSeq) histone deactylase 1 HDAC Hda1p HDA1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03082
ATP-dependent chromatin remodeling
tps03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
THAPSDRAFT_32098
03083 Polycomb repressive complex
THAPSDRAFT_32098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tps03036
]
THAPSDRAFT_32098
Enzymes [BR:
tps01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
THAPSDRAFT_32098
Chromosome and associated proteins [BR:
tps03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
THAPSDRAFT_32098
HDAC complexes
Sin3A-HDAC complex
THAPSDRAFT_32098
BRAF-HDAC complex
THAPSDRAFT_32098
REST complex
THAPSDRAFT_32098
SHIP complex
THAPSDRAFT_32098
MiDAC complex
THAPSDRAFT_32098
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
THAPSDRAFT_32098
Heterochromatin formation proteins
Other heterochromatin formation proteins
THAPSDRAFT_32098
Chromatin remodeling factors
NuRD complex
THAPSDRAFT_32098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
7452131
NCBI-ProteinID:
XP_002287594
JGI:
32098
UniProt:
B8BW26
LinkDB
All DBs
Position
2:2597675..2598931
Genome browser
AA seq
419 aa
AA seq
DB search
MTATTAITTSGSTANKQRVSYFYQPDVGHFYYGPSHPMKPHRIKMAHHLILSYGMYRQME
CYKSHPASPSEMAAFHSEDYINFMAKVTPDNLRGFSNAMNRFNVGEYTDCPVFDGLFEFT
QLYTGASLDGAVKLNRGDCDIAVNWSGGLHHAKKSEASGFCYINDIVLAILEMLKVHARV
LYIDIDVHHGDGVEEAFYCTDRVMTFSLHKYGDFFPGTGHIKDTGAKEGTGFSVNAPLTS
GMTDGTYEKLFKPVLSKIMEVFQPGAIVLQCGADSLTGDRLGCFNLSLKGHAECVKFTKS
FNVPTLVLGGGGYTIRNVARCWAYETSVLLDMELPDEIPYNDYYEYYAPDFKLHLTPEQR
ENMNTEASLESVRVDLLTQLISLKGAPSVQMMEVPPDFEVIKEDLNAEKERKSTKEDRD
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgacggcaacaacagccatcacaacaagcggcagcacagccaacaaacagcgcgtctcc
tacttctaccaacccgacgtaggccacttctactacggtccctcccacccaatgaagccc
caccgtataaaaatggcacaccatctcatcctctcgtatggaatgtatcgacaaatggaa
tgctacaaatctcatcctgcgtctcctagcgagatggcggcgtttcattccgaggactac
atcaacttcatggccaaggtgactcccgataatttgagggggttcagtaatgcaatgaac
cggttcaacgtgggggaatacacggattgtccggtctttgatggattgtttgagttcacc
cagctgtataccggggcaagcttggacggagccgtcaagttaaaccgcggtgattgcgac
attgccgtcaattggagcggggggctgcaccacgccaagaagagcgaggcttctggattc
tgctacataaacgacatcgtactggcgatattggaaatgctcaaggttcacgcccgagtg
ctctacattgatattgacgtgcatcacggggatggagtcgaagaagcgttctactgcacc
gaccgcgtcatgacgttcagcttgcacaaatacggagactttttccccggcacgggacac
attaaagatacgggtgccaaggaaggaacgggcttttcggtcaatgccccgttgacttcg
ggaatgacggacggtacctatgaaaagttgttcaaaccggtgttgagtaaaattatggag
gtgtttcagcccggagcgattgtattacagtgtggtgccgactctttgacgggggatcga
cttgggtgcttcaaccttagtttgaagggacatgcggagtgtgtcaagttcacaaagagc
tttaatgttccgacgttggtgttgggtggaggagggtatacgattcgcaatgtggcacgg
tgttgggcatatgaaacgtcggtattgttggatatggaattgccagatgagattccgtac
aatgattactatgagtattatgctcctgatttcaagctccatttgaccccggaacaacgg
gagaatatgaataccgaggcttcgctggagagtgttcgggtggatctgttgacacagctt
attagtctcaagggtgcaccgtcggtgcagatgatggaggtgccgccggattttgaggtg
attaaagaagatttgaatgcggaaaaggaacgaaagtcgactaaggaggatagagac
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