KEGG   Thalassiosira pseudonana: THAPSDRAFT_33946
Entry
THAPSDRAFT_33946  CDS       T01078                                 
Name
(RefSeq) predicted protein
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
tps  Thalassiosira pseudonana
Pathway
tps03022  Basal transcription factors
tps03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tps00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    THAPSDRAFT_33946
  09124 Replication and repair
   03420 Nucleotide excision repair
    THAPSDRAFT_33946
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tps03021]
    THAPSDRAFT_33946
   03400 DNA repair and recombination proteins [BR:tps03400]
    THAPSDRAFT_33946
Transcription machinery [BR:tps03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     THAPSDRAFT_33946
DNA repair and recombination proteins [BR:tps03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     THAPSDRAFT_33946
SSDB
Motif
Pfam: Ssl1 C1_4 VWA_2 HMBD
Other DBs
NCBI-GeneID: 7443748
NCBI-ProteinID: XP_002289463
JGI: 33946
UniProt: B8C051
LinkDB
Position
4:1783668..1785272
AA seq 422 aa
HNWEAVDSSSMWTDVQEDADGNILLTSSTQSLASQIRQRRHRLASTDLARSSKRLVRHML
RHVYLVLDASRWSREKDPALPPARLRLETIINLASEFVNEYYDQNPLGHLGVVICQDGEA
EMLTTLGGSPKKHKLALGAALVTEMKRRGPSIGGEFSLQNGIEVAGRSLGYAPRYGSREI
IVITSALATCDPGDILGETLPRLLHAGIRVSAVSLQAELHICKKLAEVTGGLAGVCMDSR
HLRDLVMGHAIPPPVVNTSKADDGETTTAHNGRNHNHTMICEFVTMGFPSRDDDRRSNRL
IAFARTGYVCPRCRSRCSDLPSDCAVCGLRLILAPHLARTFHHLFPVRPFEELDEALVIN
CDRCCFGCLKVIGCKPMDSTDGAGDEGESILRFQCPECHNAFCPDCDAYLHETLHNCPGC
LV
NT seq 1269 nt   +upstreamnt  +downstreamnt
cacaattgggaggctgttgattcctcctcgatgtggacagacgtccaagaggacgccgat
ggtaacatcctcctcacctcctccacccagagcctcgcttcccaaatacgacaacgaagg
catagactcgcttctacagacttggctcgaagttccaaaagattggtacgacacatgttg
cgtcacgtgtacttggtattggacgcaagtcgatggagtagggagaaggacccagcgttg
ccaccggctagattgagattagagacgattatcaatttggcaagtgagtttgtgaatgaa
tattatgatcaaaatccactgggtcatttgggtgtggtgatctgtcaagatggggaggcg
gagatgttgactacactggggggaagtccgaagaagcacaaacttgcattaggagcggcg
ttggtgactgaaatgaagcggagagggccgtctattggtggagagtttagtttgcaaaat
ggaatagaggtcgccggacgttctttggggtatgctcctcggtatggcagccgtgagatt
atcgtcataacgagtgctctggcgacttgtgatccgggagatatcttaggtgaaacattg
cctcggctgttgcatgcggggatacgagttagtgccgtttcattacaggcggaacttcac
atttgtaagaaattggcagaggttacgggagggttggctggtgtttgtatggacagcaga
cacttgcgtgatttggtgatgggacatgctatcccacctcctgttgtgaacacgtccaaa
gctgatgacggcgaaactactactgctcataatggcagaaaccacaaccatacaatgatt
tgcgagtttgtgacaatgggtttcccgtctcgagacgatgatcggaggtcaaatcgcctc
attgcatttgctcgtacgggatacgtgtgcccgagatgtcgatcacgttgctcggatttg
ccgtcagattgtgcagtgtgcggactgcgattgatcctggctcctcatcttgcgagaacg
tttcaccatttgtttccagtgagaccgtttgaggagctggacgaagctttggtcattaat
tgtgacaggtgctgcttcggatgtctcaaagtgattggatgcaaaccaatggactcgact
gatggagcaggagacgaaggagaatcaattttgaggtttcagtgcccggaatgtcataat
gccttttgccctgactgtgatgcgtatctgcacgaaacactccacaattgcccgggctgc
ctagtttga

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