Thalassiosira pseudonana: THAPSDRAFT_33946
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Entry
THAPSDRAFT_33946 CDS
T01078
Name
(RefSeq) predicted protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
tps
Thalassiosira pseudonana
Pathway
tps03022
Basal transcription factors
tps03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
THAPSDRAFT_33946
09124 Replication and repair
03420 Nucleotide excision repair
THAPSDRAFT_33946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tps03021
]
THAPSDRAFT_33946
03400 DNA repair and recombination proteins [BR:
tps03400
]
THAPSDRAFT_33946
Transcription machinery [BR:
tps03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
THAPSDRAFT_33946
DNA repair and recombination proteins [BR:
tps03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
THAPSDRAFT_33946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
HMBD
Motif
Other DBs
NCBI-GeneID:
7443748
NCBI-ProteinID:
XP_002289463
JGI:
33946
UniProt:
B8C051
LinkDB
All DBs
Position
4:1783668..1785272
Genome browser
AA seq
422 aa
AA seq
DB search
HNWEAVDSSSMWTDVQEDADGNILLTSSTQSLASQIRQRRHRLASTDLARSSKRLVRHML
RHVYLVLDASRWSREKDPALPPARLRLETIINLASEFVNEYYDQNPLGHLGVVICQDGEA
EMLTTLGGSPKKHKLALGAALVTEMKRRGPSIGGEFSLQNGIEVAGRSLGYAPRYGSREI
IVITSALATCDPGDILGETLPRLLHAGIRVSAVSLQAELHICKKLAEVTGGLAGVCMDSR
HLRDLVMGHAIPPPVVNTSKADDGETTTAHNGRNHNHTMICEFVTMGFPSRDDDRRSNRL
IAFARTGYVCPRCRSRCSDLPSDCAVCGLRLILAPHLARTFHHLFPVRPFEELDEALVIN
CDRCCFGCLKVIGCKPMDSTDGAGDEGESILRFQCPECHNAFCPDCDAYLHETLHNCPGC
LV
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
cacaattgggaggctgttgattcctcctcgatgtggacagacgtccaagaggacgccgat
ggtaacatcctcctcacctcctccacccagagcctcgcttcccaaatacgacaacgaagg
catagactcgcttctacagacttggctcgaagttccaaaagattggtacgacacatgttg
cgtcacgtgtacttggtattggacgcaagtcgatggagtagggagaaggacccagcgttg
ccaccggctagattgagattagagacgattatcaatttggcaagtgagtttgtgaatgaa
tattatgatcaaaatccactgggtcatttgggtgtggtgatctgtcaagatggggaggcg
gagatgttgactacactggggggaagtccgaagaagcacaaacttgcattaggagcggcg
ttggtgactgaaatgaagcggagagggccgtctattggtggagagtttagtttgcaaaat
ggaatagaggtcgccggacgttctttggggtatgctcctcggtatggcagccgtgagatt
atcgtcataacgagtgctctggcgacttgtgatccgggagatatcttaggtgaaacattg
cctcggctgttgcatgcggggatacgagttagtgccgtttcattacaggcggaacttcac
atttgtaagaaattggcagaggttacgggagggttggctggtgtttgtatggacagcaga
cacttgcgtgatttggtgatgggacatgctatcccacctcctgttgtgaacacgtccaaa
gctgatgacggcgaaactactactgctcataatggcagaaaccacaaccatacaatgatt
tgcgagtttgtgacaatgggtttcccgtctcgagacgatgatcggaggtcaaatcgcctc
attgcatttgctcgtacgggatacgtgtgcccgagatgtcgatcacgttgctcggatttg
ccgtcagattgtgcagtgtgcggactgcgattgatcctggctcctcatcttgcgagaacg
tttcaccatttgtttccagtgagaccgtttgaggagctggacgaagctttggtcattaat
tgtgacaggtgctgcttcggatgtctcaaagtgattggatgcaaaccaatggactcgact
gatggagcaggagacgaaggagaatcaattttgaggtttcagtgcccggaatgtcataat
gccttttgccctgactgtgatgcgtatctgcacgaaacactccacaattgcccgggctgc
ctagtttga
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