Thalassiosira pseudonana: THAPSDRAFT_40929
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Entry
THAPSDRAFT_40929 CDS
T01078
Name
(RefSeq) predicted protein
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
tps
Thalassiosira pseudonana
Pathway
tps03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
THAPSDRAFT_40929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tps03041
]
THAPSDRAFT_40929
Enzymes [BR:
tps01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THAPSDRAFT_40929
Spliceosome [BR:
tps03041
]
Complex A
U2 snRNP components
U2 related factors
THAPSDRAFT_40929
Complex B
THAPSDRAFT_40929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
7448431
NCBI-ProteinID:
XP_002290975
JGI:
40929
UniProt:
B8C599
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All DBs
Position
6:445335..447867
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AA seq
681 aa
AA seq
DB search
MNKKKELRAVDHASIEYLTVRKNLYIVPQSLAKLSPLEVAERRAKLGVKVRGKGAPSPVS
TFREAGLSERINAVLESKNMVNPFPVQAQCLPCIMAGRDVIGIAKTGSGKTLAFVLPMLR
HILDQPPLAPGETGPIGLILAPARELAYQIHVVCKGFTKHLGLKSTAVYGGAGVAEQIGD
LKRGTHILCATPGRLIDILTMQSGKLISLQRVSMVCLDEADRAFDMGFESQISAILSAVR
PDRQTVLFSATFPKAVEQLAKKSLRAPLEIIVGGRSVASDSVDQYAEVVEEEDKFLRLLQ
ILGDHADDQKKVIVFVGRQEQADSLFEQLTRCGYSSLSIHGGMDQEDRDSNMSDFKRVDS
GVNVLVATSVAGRGLDVPSCGCVVNYASPNHLEDYVHRVGRTGRAGNRGVAFTFVNSTDE
AKFAPSIVRALVEAGQSKNISQELNELSESYKEKVAKGEARWASSGYKGKGYTYDSSELN
DSQKLAQLEKREALIEAGLLDSDDEEGGPARDQDDDADAGVDGSGKASAPSKAKEKKDAV
GMLANVSADVLAIPGMREALLRKAGMFPAEDDAIMSTGDNHFVEEVEINDYPQQARWKVT
QKETTSRLQDEFQTAVTLKGQYVESGKAPAEGERRLYLHLEAQSRQILQNCIVEIKRLLN
EETLRVGARSMGGGGRYNVLS
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgaataagaagaaggagttacgggcggtggatcatgcttctattgagtacttgacggtg
aggaagaatctgtatattgttccccagtcattggccaagttgtcgcctttggaagtagcg
gaacggagggcaaagttgggagtgaaggttcgaggtaagggggctccatcaccggtgtcg
acatttcgtgaggcggggttgtcggaacggattaacgccgtgttggagagtaagaatatg
gttaatccgtttcctgttcaggctcagtgcttgccgtgcatcatggcagggagggatgta
ataggcattgcgaaaactgggagtggaaagaccttggcgtttgttttgcccatgctgagg
cacatattagatcaacctccgctggcgcctggagagactggtcctattggcctcatcctt
gcacctgcaagagaactggcgtatcagatccatgtcgtttgtaagggatttacaaagcat
ttgggattaaagtctactgcagtatacggaggagctggtgttgctgaacagattggagac
ttgaagcgaggaacgcacatcttgtgtgccactcccgggcgtttgattgacatcttgaca
atgcagagtggaaaactcatatcattgcaacgagtatcgatggtgtgtttggatgaggca
gatcgcgcatttgacatggggtttgaatctcagatctctgctattctgtctgcagtgaga
cccgatcgtcaaacggtattgttttcggccaccttccccaaggctgttgagcaactggct
aaaaagtcactgagagcacctcttgaaataatcgtcggtggccgatcggtggcttctgat
tcagtagatcaatatgcagaagtggtggaagaagaggacaaattcttgagactactgcag
atattgggagatcacgccgatgaccaaaagaaagtgattgtgtttgtgggaaggcaagag
caggcagactctctgtttgagcagctgacccgttgtggctactcatccttgtctatccat
ggaggtatggaccaagaagatcgtgattccaacatgtcggacttcaaaagagtggattct
ggtgtcaacgtgttagttgcgacgagtgtagctggaagaggtttagacgtgccttcctgt
ggatgtgtagtgaactacgcatctccgaaccatttagaagattacgttcatcgagtcggt
agaactggacgagcggggaatcgcggagttgcatttacattcgtgaactcaactgacgaa
gcgaaatttgcaccaagcattgtcagagcactcgtcgaagcaggtcaatctaagaatatc
agccaggagctgaatgagctatcggaatcttacaaagagaaggtggcaaaaggagaagct
cgatgggcgagttctggctacaagggcaaggggtacacgtatgactcgtctgaattgaac
gattctcagaagctagctcagctggagaaacgcgaggctcttattgaagctggacttctt
gattctgatgacgaggaaggtggcccagctagagatcaggacgatgatgccgacgctggt
gttgatgggagtgggaaagcaagtgctcctagcaaagccaaagaaaagaaagatgccgtg
gggatgcttgccaacgtgtcagcagatgttcttgccattcctggtatgcgtgaagctcta
ttacgaaaagctggcatgtttcccgctgaagatgatgcgatcatgtcgacaggtgacaat
cactttgtggaggaggtcgaaattaacgattatcctcaacaggctagatggaaggttacc
cagaaagaaacaacttcacgcctccaagacgagtttcagactgctgtaacactcaaaggt
caatacgtcgagtccggcaaagcccctgcggagggtgagagaaggttgtatcttcatttg
gaagcccaaagtcgtcagatactgcaaaactgcattgttgagatcaaacggttgcttaat
gaggagacacttcgggttggtgccagaagtatgggtggcgggggacgatacaacgtgttg
agttag
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