Thalassiosira pseudonana: THAPSDRAFT_4260
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Entry
THAPSDRAFT_4260 CDS
T01078
Name
(RefSeq) WD40-repeat protein
KO
K08266
target of rapamycin complex subunit LST8
Organism
tps
Thalassiosira pseudonana
Pathway
tps04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
tps00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
THAPSDRAFT_4260
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tps04131
]
THAPSDRAFT_4260
Membrane trafficking [BR:
tps04131
]
Autophagy
Other autophagy associated proteins
mTORC1 complex
THAPSDRAFT_4260
mTORC2 complex
THAPSDRAFT_4260
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
ANAPC4_WD40
Ge1_WD40
NBCH_WD40
Nup160
Cytochrom_D1
Motif
Other DBs
NCBI-GeneID:
7447477
NCBI-ProteinID:
XP_002289220
JGI:
4260
UniProt:
B8C1D3
LinkDB
All DBs
Position
4:589107..590607
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AA seq
327 aa
AA seq
DB search
MARGSPSNMSVILATAGHDDKIRFWEAPSGVCSRILRYADSQVNCLEITPDKQYLAAGGN
PHIRLFEINNSSNQNPILTLEGHTGNVTSLGFQRNGRYLYSGSEDGSVKLWDLRSPTYSR
SFDSKGPVNSVALHPNQAEIISGDQNGSIKIWDLGSSKCINDIIPDAQSSSTSPQGRVAI
QSVDVSGDARTLVAANNHAEVFAWNPSDTTNMQNDEPFRPVAKFRAHPLGAYLLHARISP
DSLSLVTTSSDKTVRLWDTRTWQLTQTLSQHNKWVWDAVFSADSSYLVTASSDRTARLWN
LRTGTPVRQYTDHDYAVTCVALNDSST
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcgggtcgccctcaaacatgagcgttatcctcgcaaccgccggtcatgacgac
aaaattcgcttttgggaggcaccgtctggggtttgctcccgtattctcagatatgcagat
agtcaggtgaattgtttggagataacacccgataagcaataccttgcagccggagggaat
cctcatattcgtctctttgaaatcaataactcctccaatcaaaacccaatcttaacactt
gagggacatactggcaatgtcaccagtttggggtttcaacgaaatggaagatatctgtac
agtggatcggaggatggaagtgtgaagctgtgggatctacgaagtcccacttactcacga
tcttttgactcaaaaggtccagtgaattcagtggctctgcatccgaatcaagctgaaatt
atatcgggtgatcaaaatggatccatcaagatctgggatcttggcagttctaaatgcatc
aacgatattataccagatgctcaatcgtcatcaacttcgccacagggacgtgtagcaatt
caatcagtagatgtgtcaggcgatgctcgtacattggtagcagcaaacaatcacgctgaa
gtatttgcatggaatcctagcgacacaacaaacatgcagaatgatgaaccgtttaggcca
gtggccaaattccgtgctcacccgctcggggcatacttgcttcatgctagaatctcccca
gactcgttgtctttggtaacaacgagcagtgacaaaacagttcgtctttgggatacaaga
acgtggcaactgacacagactctttcacaacacaacaaatgggtttgggatgccgtattc
tctgctgattcgagctacttggttacagcgagtagtgatcggactgctcgattgtggaat
cttcgtaccggcacacctgtgaggcagtatacggatcatgattatgcagtgacatgcgtt
gctttgaatgatagcagcacatag
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integrated database retrieval system
