Tsukamurella pulmonis: TPB0596_36400
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Entry
TPB0596_36400 CDS
T08311
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tpul
Tsukamurella pulmonis
Pathway
tpul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TPB0596_36400 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpul03400
]
TPB0596_36400 (mfd)
Enzymes [BR:
tpul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TPB0596_36400 (mfd)
DNA repair and recombination proteins [BR:
tpul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TPB0596_36400 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
HEM4
LSDAT_prok
AAA_22
IstB_IS21
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BDD83877
LinkDB
All DBs
Position
3641859..3645512
Genome browser
AA seq
1217 aa
AA seq
DB search
MPDVVAFPAPALSGLTRAVAADPDVAAFAGAAGRPELTVTAVDGARPFLVSALADRAPVL
VVTATGREADDLSSELQEMLGEDAVAQFPSWETLPHERLSPGADTVGRRLQVLRRLAHPD
DAEYGAPLRAVVATVRSLVQPMAPGLGDAPSITLREGLEHDFDELIETLVELAYTRVDMV
GKRGEFAVRGGILDVFPTTTDLPVRVEFFGDEITDLRAFSVADQRSQPEVEVGTVHVYPC
RELLLTPEVRERAAVLKSQHESDAALAEMLEKLSQGIPVEGMEALIPALIPGDLQLLTDV
LPADAHTLLLDPEKIRTRAADLGRTGQEFLEASWTAAALGSAAPLDPTGIDLGASAYRPL
DEVHASVSDRGRPWWTVSPLAAGPETGDDQLIVHAEHAPAPRGSEAEAEKLFATLRAHAA
SGGTGVIVVAGQGTRARIMERLRDAEVPAVELDAGAAPQPGTVGVLRGSLQTGLTIPAEK
LVLLAEPDLTGNRVAGVGDGRRLPAKRRNQVDPLALTAGDLVVHDEHGIGKFVEMIERTV
AGARREYLVIEYAPGKRGQPGDKLFVPMESLDQLSRYVGGEMPALSKMGGSDWQNTKRKA
RKAVREIAGELVQLYAARNAAPGHAFAPDSPWQREMEDAFPFTETIDQMTVIGDVKADME
KPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLKTFQERMQGFP
VTVKGLSRFTDKLETRQVLDGLADGSVDVVVGTHRLLQTGVRWKDLGLVIVDEEQRFGVE
HKEHIKALRTNVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYDDKQ
VAAAIRRELLRDGQVFYIHNRVSSIDKAAKHIRDLVPEARVVVAHGQMGEEALESTVQGF
WNREFDVLVCTTIVETGLDISNANTLIVERAENLGLSQLHQLRGRVGRSRERGYAYFLYP
AEKPLTETAYDRLATIAQNNDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVR
LVGEAVEAYRAAADGKPITVPEEQKEVRIDLPVDAHIPPDYVTSDRLRLEAYRKLAAAHD
DAAVAEVLTELTDRYGPPPVEVERLAAIARLRSLARAAGVTEITVTGTNLRISPLELLDS
QQMRLKRLYPGGSYRAATRTVTIPLPRVGGGGIGSERVRDIEVLQAVADFLAAMDGKGAG
YWRLDQPPRALATAEAP
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgacgtcgttgccttccccgccccggccctttccggactgaccagggccgtcgcc
gccgatccggacgtcgccgccttcgcgggggccgcgggcaggccagagctcaccgtcacc
gcggtcgacggcgcccggcccttcctggtctcggcgctcgccgatcgcgcccccgtcctc
gtcgtcacggccacgggtcgcgaggccgacgacctctcctccgagctgcaggagatgctc
ggggaggacgccgtcgcccagttcccgagctgggagaccctgccgcacgagcgtctgtcc
cccggtgccgacaccgtcggacggcgcctgcaggtactgcgccgcctcgcgcaccccgac
gacgccgagtacggcgcgccgctgcgcgccgtggtggcgacggtccgctcgctggtgcag
ccgatggcccccgggctgggcgacgcaccgtcgatcacgctgcgcgagggcctcgagcac
gacttcgacgagctcatcgagaccctcgtggagctcgcctacacgcgggtcgacatggtg
ggcaagcgcggtgagttcgccgtgcgcggcggcatcctcgacgtcttccccaccaccacg
gatctgcctgtgcgcgtggagttcttcggcgacgagatcaccgatctgcgcgccttctcg
gtggccgaccaacgctcgcagcccgaggtcgaggtgggtacggtgcacgtctacccctgc
cgcgagctgctgctcacccccgaggtccgcgagcgcgccgcggtgctcaagtcccagcac
gagtccgatgccgcgctcgcggagatgctggagaagctctcccagggcattccggtggag
ggcatggaggcgctgatccccgcgctcatcccgggcgatctccagttgctcaccgacgtg
ctccccgcggatgcgcacaccctgctgctcgatcccgagaagatccgcacccgcgcagcc
gatctcggccgtaccggccaggagttcctcgaggcgtcgtggaccgcggccgcgctgggc
tccgcggcgccgctcgatccgacggggatcgacctgggcgccagcgcctaccgcccgctc
gacgaggtgcacgcctccgtctccgaccgcggccgcccgtggtggaccgtctccccgctc
gcggccgggcccgagaccggcgacgaccagctgatcgtccacgccgaacacgcccccgcc
ccacggggttccgaggccgaggcggagaagctgttcgccaccctgcgcgcgcacgccgca
tccggcggtaccggcgtgatcgtggtcgcgggccagggcacccgggcccggatcatggag
cgcctgcgcgacgccgaggtcccggccgtcgagctcgacgcgggcgccgccccgcagccg
ggcaccgtcggcgtgctccgcggcagcctgcagaccggcctgaccatcccggccgagaag
ctcgtgctgctcgcggagcccgacctcacgggcaaccgggtcgccggtgtcggcgacggc
cgacggctgcccgccaagcgccgcaaccaggtcgacccgctggccctgaccgccggggac
ctggtggtgcacgacgagcacggcatcggcaagttcgtggagatgatcgagcgcaccgtc
gccggtgcgcggcgcgagtacctggtgatcgagtacgcgccgggcaagcgcggccagccc
ggcgacaagctcttcgtgccgatggagtccctcgaccagctctcccggtacgtgggcggc
gagatgcccgcgctgtccaagatgggcggcagcgactggcagaacaccaagcgcaaggcc
cgcaaggccgttcgcgagatcgccggcgagctggtgcagctctacgcggcgcgcaacgcc
gcacccggccacgccttcgcgccggactcgccgtggcaacgcgagatggaggacgccttc
cccttcaccgagaccatcgaccagatgacggtcatcggggacgtgaaggccgacatggag
aagccggtcccgatggatcgcgtcgtgatcggcgacgtgggctacggcaagacggagatc
gcggtgcgggcggctttcaaggccgtgcaggatggcaagcaggtcgccgtcctcgtgccc
acgacgctcctcgcccaacagcacctgaagaccttccaggagcgcatgcagggcttcccc
gtcaccgtcaagggcctgtcccgcttcaccgacaagctcgagacccgccaggtcctcgac
ggtctcgcggacggcagtgtcgacgtcgtcgtcggcacccaccggctgctgcagacgggc
gtgcggtggaaggatctggggctggtcatcgtcgacgaggagcagcgcttcggcgtcgag
cacaaggagcacatcaaggcgctgcgcaccaacgtcgacgtgctcaccatgagcgccacc
ccgatcccccgcacactggagatgagcatggcgggcatccgcgagatgtccaccatcctc
accccgcccgaggagcggcaccccgtgctcacctacgtcggcgcctacgacgacaagcag
gtggccgccgccatccgtcgtgagctgctgcgcgacggccaggtcttctacatccacaac
cgcgtcagctcgatcgacaaggccgccaagcacatccgcgacctggtgcccgaggcccgc
gtcgtggtggcgcacgggcagatgggcgaggaggcgctcgagagcacggtgcaggggttc
tggaaccgcgagttcgacgtgctggtgtgcaccaccatcgtcgagaccggcctggacatc
tcgaacgcgaacaccctcatcgtggagcgcgccgagaacctgggcctgagccagctgcac
cagctgcgcggccgcgtgggccgctcccgcgagcgcggctacgcctacttcctctacccc
gccgagaagccgctcaccgagaccgcctacgaccggctcgcgaccatcgcgcagaacaac
gatctcggcgccggcatggccgtggcgatgaaggacctcgagatccgcggcgccggtaac
gttctcggcgccgagcagtccggtcacgtcgccggtgtcggcttcgatctgtacgtacgg
ctggtcggcgaggcggtcgaggcctaccgcgccgccgccgacggtaagccgatcacggtg
ccggaggagcagaaggaggtgcgcatcgacctgccggtggacgcgcacatcccgcccgat
tacgtcaccagcgaccggctgcgcctggaggcctaccgcaagctggccgcggcgcacgac
gacgcggccgtcgccgaggtgctcaccgagctcaccgaccgctacggaccgccgccggtc
gaagtggagcggctcgcagcgatcgcgcggctgcggtcgctggcccgcgccgccggcgtc
accgagatcaccgtgaccggaacgaatctgcggatctcgccgctggagttgctcgactcg
cagcagatgcggctcaagcgcctgtacccgggcggctcgtaccgcgcggccacccgcacc
gtcaccatccccctgccccgtgtgggcgggggcggcatcggcagcgagcgcgtccgcgac
atcgaggtgctgcaggcggtggcggacttcctcgccgcgatggacgggaagggcgccggc
tactggcgcctcgaccagccgccccgcgccctggcgaccgcggaggcgccgtga
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