Trueperella pyogenes TP6375: CQ11_05760
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Entry
CQ11_05760 CDS
T03070
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tpy
Trueperella pyogenes TP6375
Pathway
tpy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CQ11_05760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpy03400
]
CQ11_05760
Enzymes [BR:
tpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CQ11_05760
DNA repair and recombination proteins [BR:
tpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CQ11_05760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
UB2H
CbiX
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AHU89574
LinkDB
All DBs
Position
complement(1214366..1217881)
Genome browser
AA seq
1171 aa
AA seq
DB search
MDLRPVLSVFRDQDPLSSRVNSRFADVGMPRGAFAPAIAEMLHAGDGRLQVAVTTSGREA
EDLRDALRAYIPAENMAIFPAWETLPHERLSPRSDTVAERLTTLRRLAHPEDFPELRVLL
VPVRAFLQPIAAGLGELTPVSLRVGDACDFHDLQERLVAAAYQRVDMIEARGQFAVRGGI
IDIFPPTTDHPLRVEFFGDEVDEIRSFAVSDQRSMDGVDELYAPPCREILLSDDVRSRAA
HALEELPGAVDMLDKIAHGIAVEGMESLQPVLVEQMHPLVEELPANARIILVEPERLDAR
AQSLHETTQEFLAAAWSSAAAGGTIPISVTKASFLEIPDVRDRAIELGLGWWTIGGFAES
DAIWLPLREPRNFAGNVDAALGELSRLAREQWRIVIAVEGAGLGRRLVEQLADADVPATF
AENLREVTPGVVAIVTAPVQSGFIADSAKFALLGAMDLVGRKRSRSAQLRQMPKRRKNAV
DPLQLKPGDYVVHARHGVAQFVKLAKRQLGGPSGTQREYVVLEYAASKRGQARDQLWVPT
DQLDQISKYSGGDAPPLNKMGGADWEKTKSKARAAVKQIAKELVRLYAQRRATKGHAFSP
DTPWQRELEDAFEFVETPDQLATIEEVKRDMESPEPMDRLISGDVGYGKTEIAVRAAFKA
VQDGKQVAVLAPTTLLVQQHLETFQERYAGFPVKVAGLSRFQSAKESEEVKDGVRRGEVD
VVIGTHRLITGDVRFKDLGLVIIDEEQRFGVEHKETLKQMYPAIDVLAMSATPIPRTLEM
AVTGLRQMSTLATPPEERHPILTYVGAHENQQIAAAIKRELLRDGQVFYVHNRTQSINKV
AAELAEMVPDASVGVAHGKMSEHQLEQVIQQFWDKEIDVLVCTTIVETGLDISNANTLIV
ENAHKLGLSQLHQLRGRVGRGRERAYAYFLYPRDGTMTETAIERLRTIAAHTELGAGFQV
ALKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVSEAVAGITGQDSRTEAEKAAETRIEL
PVDAYVPETWVTSERLRLEIYTKIAASTNETQRADIRGELVDRYGSVPVEVDRLFALAKL
REKVRSVGIEEITMQGNNVRLAPVVLPDSRQARLRRLYPKSIAKPAIRMILVPLPVENER
RLGAAKVIEGDAVVQFVEQVIDSVMLASIGS
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggatcttcgccccgttctgtccgttttccgcgatcaggatccgctctcttcgcgcgtg
aactctcgctttgccgacgtcggaatgccgcgcggtgccttcgccccggcgattgcggag
atgctgcatgcaggggatggccggctgcaggtggccgtgacgacgtcgggccgcgaagcg
gaggatctgcgcgacgcgctacgcgcctacattccggccgaaaacatggcgatcttcccc
gcctgggagaccctcccgcatgagcgcctctcgccgcgctcggacacggtcgctgaacgc
ttgacgacgctgcgccgcctcgcccacccagaggatttcccggagctgcgcgtcctgctc
gtcccggttcgcgctttcctgcaaccgatcgctgccggtctcggcgagctgacgccggtg
agcttgcgcgtcggcgacgcctgcgacttccacgatctgcaagaacgcctggtggcagcc
gcctaccagcgggtggacatgatcgaggcgcgcggccagtttgccgtgcgtggcggcatc
atcgacatcttcccacccacgaccgaccacccgcttcgcgtggagttcttcggtgacgag
gtggacgaaattcgctccttcgcggtttcggaccagcgttcgatggacggcgtcgacgag
ctgtatgcgccaccgtgccgggaaattttgctcagcgacgacgtccgctcccgcgccgcc
cacgccctggaggaactcccgggcgcggtagacatgctggacaagatcgcacacggcatt
gcggtggaggggatggagtcgcttcagccggtgctcgtcgagcagatgcatccgctggtt
gaagaacttcccgcaaacgcccggatcatcctcgttgagccagagcgtctggatgcacgc
gcgcagtccctgcacgagacaacgcaggagtttttagctgcggcgtggtcgtctgcggcg
gcgggcggcacgatcccgatctcggtgacgaaggcgtccttcctcgagattcccgacgtg
cgcgaccgcgccattgagctgggccttggctggtggacgatcggcggattcgccgagtcg
gacgcgatctggctgccactgcgtgagccgcgcaacttcgctggaaacgtcgacgctgcg
ctgggtgagctgtcgcgtcttgcacgcgagcagtggaggattgtcatcgccgtcgagggc
gcgggtctcgggcgccgcctcgttgaacagctcgccgacgccgatgttccagccacgttc
gccgagaacctgcgtgaggtgacccccggcgtcgtcgccatcgtgaccgcacccgtgcag
tctggcttcatcgcagattcagctaagtttgccctgctcggagcgatggaccttgttggg
cgcaagcgctcgcgatccgcgcagctccgccagatgcccaagcgccgcaagaacgccgtc
gacccgctccaactcaagccgggcgattacgtcgtgcatgcgcgccacggcgtcgcgcag
ttcgtgaaactcgcgaagcggcaactgggcgggccgagcgggacgcagcgcgaatatgta
gtgctcgaatacgccgcatccaagcgcggacaggcccgcgaccagctgtgggtgccaacc
gaccagctcgaccaaatctcgaagtattccggcggtgacgccccgccgctaaacaagatg
ggcggcgccgactgggaaaagacgaagtcgaaagcgcgcgcggctgtcaagcagatcgca
aaggagctcgtgcggctgtacgcccagcgccgggcgacgaagggtcacgcgttctccccg
gacaccccctggcagcgcgaattggaagatgccttcgagtttgtggaaactcccgaccag
ctcgcgactatcgaggaagtcaagcgcgatatggagtccccggagcccatggatcgcctc
atctccggcgacgtcggctacggcaagaccgagatcgccgtccgcgccgccttcaaggcg
gttcaggatggcaaacaggtggcagtccttgcgccgaccacgctgctcgtccagcagcac
ctcgagaccttccaagagcgctacgccggattccccgtcaaggtcgccggcctatcgcgc
tttcagagcgccaaagaatcggaggaagttaaggacggcgtgcgccgcggtgaggtcgac
gtcgtgattggaacccaccgcctcatcacgggcgacgtgcgtttcaaagacctcggtctg
gtgatcatcgacgaggagcaacgcttcggcgtcgagcacaaggaaacgctcaagcagatg
tatccggcgatcgacgtgctcgccatgtcggccaccccgatcccgcgcacgctcgagatg
gcggtgacggggttgcggcagatgtccacgctcgccaccccgcccgaggaacgccacccg
atcctgacctacgtcggggcgcacgaaaaccagcaaatcgccgccgcgatcaagcgcgag
ctgctgcgcgacggccaagttttctacgtccacaaccgcacccagtcgattaacaaagtg
gccgccgagctggccgagatggttccggatgctagcgtcggggtagcgcacggaaagatg
agcgagcatcagctcgagcaggtgatccagcagttctgggacaaggagatcgacgtgctc
gtgtgtacgacgatcgtggagaccgggctcgacatctcgaacgcgaacaccctcattgtg
gaaaacgcccacaagctcgggctctcccagcttcatcagctgcgcgggcgagttgggcgc
gggcgcgaacgcgcatatgcctacttcctctacccccgcgacgggacgatgaccgagacc
gcgatcgagcgtctgcgaaccatcgccgcacacaccgagctcggcgcgggcttccaggtg
gcgctcaaggatttggagattcgtggcgctggcaacctgctgggcggcgagcagtccggg
cacatcgcaggggtgggctttgacctgtacattcgcatggtctccgaggcggtcgccggg
atcacggggcaggacagccgaaccgaggcggaaaaggccgccgagactcggatcgaactg
ccggtggacgcctacgtgcccgaaacgtgggtgacttccgagcgcctgcgcctggagatc
tacacgaagatcgcagcctctaccaatgagacgcaacgggcagatatccgcggcgaactc
gtggaccgctacggttcggtgcccgtggaggtggatcgcctgtttgcgctggccaaattg
cgcgagaaggtgcgctcggtggggatcgaagagatcaccatgcaaggcaacaacgtgcgc
ttggcgcccgttgttctgccggattcgcgccaggcgcgcctacgccgcctctacccgaag
tcgatcgccaaaccggcaatccgcatgatccttgtgccgctgccggtggagaacgagcgg
cgcttgggcgcggcgaaggtgatcgagggcgacgccgtcgtgcagttcgtcgagcaggtt
atcgattcggtgatgctggccagcatcggaagctag
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