Trueperella pyogenes TP8: X956_01925
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Entry
X956_01925 CDS
T03579
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tpyo
Trueperella pyogenes TP8
Pathway
tpyo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpyo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
X956_01925
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpyo03400
]
X956_01925
Enzymes [BR:
tpyo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
X956_01925
DNA repair and recombination proteins [BR:
tpyo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
X956_01925
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
MFD_D3
UB2H
CbiX
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AJC69034
LinkDB
All DBs
Position
412148..415663
Genome browser
AA seq
1171 aa
AA seq
DB search
MDLRPVLSVFRDQDPLSSRANSRFADVGMPRGAFAPAIAEMLHAGDGRLQVAVTTSGREA
EDLRDALRAYIPAENMAIFPAWETLPHERLSPRSDTVAERLTTLRRLAHPEDFPELRVLL
VPVRAFLQPIAAGLGELTPVSLRVGDACDFHDLQERLVAAAYQRVDMIEARGQFAVRGGI
IDIFPPTTDHPLRVEFFGDEVDEIRSFAVSDQRSMDGVDELYAPPCREILLSDDVRSRAA
HALEELPGAVDMLDKIAHGIAVEGMESLQPVLVEQMHPLVEELPANARIILVEPERLDAR
AQSLHETTQEFLAAAWSSAAAGGTIPISVTKASFLEIPDVRDRAIELGLGWWTIGGFAES
DAIWLPLREPRNFAGNVDAALGELSRLAREQWRIVIAVEGAGLGRRLVEQLADADVPATF
AEDLREVTPGVVAIVTAPVQSGFIADSAKFALLGAMDLVGRKRSRSAQLRQMPKRRKNAV
DPLQLKPGDYVVHARHGVAQFVKLAKRQLGGPSGTQREYVVLEYAPSKRGQARDQLWVPT
DQLDQISKYSGGDAPPLNKMGGADWEKTKSKARAAVKQIAKELVRLYAQRRATKGHAFSP
DTPWQRELEDAFEFVETPDQLATIEEVKRDMESPEPMDRLISGDVGYGKTEIAVRAAFKA
VQDGKQVAVLAPTTLLVQQHLETFQERYAGFPVKVAGLSRFQSAKESEEVKDGVRRGEVD
VVIGTHRLITGDVRFKDLGLVIIDEEQRFGVEHKETLKQMYPAIDVLAMSATPIPRTLEM
AVTGLRQMSTLATPPEERHPILTYVGAHENQQIAAAIKRELLRDGQVFYVHNRTQSINKV
AAELAEMVPDASVGVAHGKMSEHQLEQVIQQFWDKEIDVLVCTTIVETGLDISNANTLIV
ENAHKLGLSQLHQLRGRVGRGRERAYAYFLYPRDGTMTETAIERLRTIAAHTELGAGFQV
ALKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRMVSEAVAGITGQDSRTEAEKAAETRIEL
PVDAYVPETWVTSERLRLEIYTKIAASTNETQRADIRGELVDRYGSVPVEVDRLFALAKL
REKVRSVGIEEITMQGNNVRLAPVVLPDSRQARLRRLYPKSIAKPAIRMILVPLPVENER
RLGAAKVIEGDAVVQFVEQVIDSVMLASIGS
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggatcttcgccccgttctgtccgttttccgcgatcaggatccgctctcttcgcgcgcg
aactctcgctttgccgacgtcggaatgccgcgcggtgccttcgccccggcgattgcggag
atgctgcatgcaggggatggccggctgcaggtggccgtgacgacgtcgggccgcgaagcg
gaggatctgcgcgacgcgctacgcgcctacattccggccgaaaacatggcgatcttcccc
gcctgggagaccctcccgcatgagcgcctctcgccgcgctcggacacggtcgctgaacgc
ttgacgacgctgcgccgcctcgcccatccagaggatttcccggagctgcgcgtccttctc
gtcccggttcgcgctttcctgcaaccgatcgctgccggtctcggcgagctgacgccggtg
agcttgcgcgtcggcgacgcctgcgacttccacgatctgcaagaacgcctggtggcagcc
gcctaccagcgggtggacatgatcgaggcgcgcggccagtttgccgtgcgtggcggcatc
atcgacatcttcccacccacgaccgaccacccgcttcgcgtcgagttcttcggtgacgag
gtggacgaaattcgctccttcgcggtttcggaccagcgttcgatggacggcgtcgacgag
ctgtatgcgccaccgtgccgggagattttgctcagcgacgacgtccgctcccgcgccgcc
cacgccctggaggaactcccgggcgcggtagacatgctggacaagatcgcacacggcatt
gcggtggaggggatggagtcgcttcagccggtgctcgtcgagcagatgcatccgctggtt
gaggaacttcccgcaaacgcccggatcatcctcgttgagccagagcgtctggatgcacgc
gcgcagtccctgcacgagacgacgcaggagtttttagctgcggcgtggtcgtctgcggcg
gcgggcggcacgatcccgatctcggtgacgaaggcgtccttcctcgagattcccgacgtg
cgcgaccgcgccattgagctgggccttggctggtggacgatcggtggcttcgccgagtcg
gacgcgatctggctgccactgcgtgagccgcgcaacttcgctggaaacgtcgacgccgcg
ctgggtgagctgtcgcgtcttgcacgcgagcagtggagaattgtcatcgccgtcgagggc
gcgggtctcgggcgccgcctcgttgaacagctcgccgacgccgatgttccagccacgttc
gccgaggacctgcgtgaggtgacccccggcgtcgtcgccatcgtgaccgcacccgtgcag
tctggcttcatcgcagattcagctaagtttgccctgctcggagcgatggaccttgttggg
cgaaagcgctcgcgatccgcgcagctccgccagatgcccaagcgccgcaagaacgccgtc
gacccgctccagctcaagccgggcgattacgtcgtgcatgcgcgccacggcgtcgcgcag
ttcgtgaaactcgcgaagcggcaactgggcgggccgagcgggacgcagcgcgaatatgtc
gtgctcgaatacgcgccgtccaagcgcggacaggcccgcgaccagctgtgggtgccaacc
gaccagctcgaccaaatctcgaagtattccggcggtgacgccccgccgctaaacaagatg
ggcggcgccgactgggaaaagacgaagtcgaaagcgcgcgcggctgtcaagcagatcgca
aaggagctcgtgcggctgtacgcccagcgccgggcgacgaagggtcacgcgttctccccg
gacaccccctggcagcgcgaattggaagatgccttcgagtttgtggaaactcccgaccag
ctcgcgactatcgaggaagtcaagcgcgatatggagtccccggagcccatggatcgcctc
atctccggcgacgtcggctacggcaagaccgagattgccgtccgcgcggcctttaaggcg
gttcaggatggcaaacaagtggccgtccttgcgccgaccacgctgctcgtccaacagcac
ctcgagaccttccaagagcgctatgccggattccccgtcaaggtcgccggcctgtcgcgc
tttcagagcgccaaagaatcggaggaagttaaggacggcgtgcgtcgcggcgaggtcgac
gtcgtgattggaacccaccgcctcatcacgggcgacgtgcgtttcaaagacctcggtctg
gtgatcatcgacgaggagcaacgcttcggcgtcgagcacaaggaaacgctcaagcagatg
tatccggcgatcgacgtgctcgccatgtcggccaccccgatcccgcgcacgctcgagatg
gcggtgacggggttgcggcagatgtccacgctcgccaccccgcccgaggaacgccacccg
atcctgacctacgtcggggcgcacgaaaaccagcaaatcgccgccgcgatcaagcgcgag
ctgctgcgcgacggccaagttttctacgtccacaaccgcacccagtcgattaacaaggtg
gccgccgagctggccgagatggttccggatgctagcgtcggggtagcgcacggaaagatg
agcgagcatcagctcgagcaggtgatccagcagttctgggacaaggagatcgacgtgctc
gtgtgtacgacgatcgtggagaccgggctcgacatctcgaacgcgaacaccctcattgtg
gaaaacgcccacaagctcgggctctcccagcttcatcagctgcgcgggcgagttgggcgc
gggcgcgaacgcgcatatgcctacttcctctacccccgcgacgggacgatgaccgagacc
gcgatcgagcgtctgcgaactattgccgcacacaccgagctcggggcgggcttccaggtg
gcgctcaaggatttggagattcgtggcgctggcaacctgctgggcggcgagcagtccggg
cacatcgcaggggtaggctttgacctgtacattcgcatggtttccgaggcggtcgccggg
atcacggggcaggacagccgaaccgaggcggaaaaggccgccgagactcggatcgaactg
ccggtggacgcctacgtgcccgaaacgtgggtgacctccgagcgcctgcgcctggagatc
tacacgaagatcgcagcctctaccaatgagacgcagcgggcggatatccgcggcgaactc
gtggaccgctacggttcggtgcccgtggaggtggatcgcctgtttgcgctggccaaactg
cgcgagaaggtgcgctcggtggggatcgaagagatcaccatgcaaggcaacaacgtgcgc
ttggcgcccgttgttctgccggattcgcgccaggcgcgcctacgccgcctctacccgaag
tcgatcgccaaaccggcaatccgcatgatccttgtgccgctgccggtggagaacgagcgg
cgcttgggcgcggcgaaggtgatcgagggcgacgccgtcgtgcagttcgtcgagcaggtt
atcgattcggtgatgctggccagcatcggaagttag
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