Talaromyces rugulosus: TRUGW13939_05675
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Entry
TRUGW13939_05675 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
trg
Talaromyces rugulosus
Pathway
trg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TRUGW13939_05675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
trg03400
]
TRUGW13939_05675
Enzymes [BR:
trg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TRUGW13939_05675
DNA repair and recombination proteins [BR:
trg03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
TRUGW13939_05675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
RNA_ligase
BRCT
DNA_ligase_IV
RTT107_BRCT_5
LIG3_BRCT
VMAP-M1
Motif
Other DBs
NCBI-GeneID:
55993172
NCBI-ProteinID:
XP_035344728
LinkDB
All DBs
Position
III:join(2348108..2348178,2348235..2350345,2350395..2350526,2350587..2350719,2350786..2351369,2351424..2351440)
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AA seq
1015 aa
AA seq
DB search
MEHHDLDTQMPDAGQPDEQDLDEKYPNRPRNHANTLPFHDLFTDLFNPLSENKKRPKVSG
PASRRKVGPHGPSNLTPQDSRRDVIQRFISRWRKDVGDDIYPAFRLIVPDKDRDRAMYGL
KEKVIGKLLVRIMKIDKNSEDGFNLLNWKLPGQSAASRMAGDFAGRCFEVLSKRPMRVEV
GDMLIEEVNDRLDQLSAAPKEDQQLPILTEFYRRMNPEELMWLIRIILRQMKVGATERTF
FNVWHPDAERLFSISSSLRRVCWELHDPNIRLEGDERGVSLMQCFQPQLAQFQMHSFEKM
VQRMRPTDDDPTFWIEEKLDGERMQLHMASDDSVEGGKRFCFWSRKAKEYTYLYGNGFYD
PNGSLTRHLKDAFVDSVDNIILDGEMVTWDPEQDAPVPFGTLKTAALAEKRDPNSHGPRP
LFRVFDILYLNDRELTRYTLRDRRRALEKAIQPVHRRFEIHSYQEATTAAEIEPILRKVI
EEASEGLVLKNPRSPYRLNERHDDWMKVKPEYMTEFGESLDLVVIGGYYGSGRRGGGLSS
YLCGLRVNDPNAQNGDSPMKFYSFCKVGGGFTATDYANIRHHTDGKWKTWNPKKPPSEFI
ELAGGVTGPKEVPDEWIRPDESVVVCVKAASVSVSDEFRIGLTLRFPRFKRLRMDKDWKT
ALSVQEFLDLKSNVEQEQKEKQFTVENFRKKRLKMTAKKPLTVAGYDGDTTVEYAGPVNN
VFDGLNFFVMTDTKTPEKKTKAELEQLVKSNGGQIFQTHTAAPNTVCIADRRTVKVASIQ
KSGSQNIIRPIWLFDCIKQTEADENLPTFLLPFEPRHMFFAKEDQQDNIAENVDEYNDSY
TRNTTVEELKAVLEDMKLDRAIDTEAISQISARLFAQTQEEHSQGAALPGWIFKGLTLYF
HSPESPSPLNSSNSDISQRLQLARSLAEFGSADISETLETGQSKKKDTKTGITHIVVPSP
HSSREGEEELASLRKTLSKLVSSSGYKLPHIVSVDWVERSWKEKTLLDEERYAPS
NT seq
3048 nt
NT seq
+upstream
nt +downstream
nt
atggagcatcacgatctagacacgcaaatgccagatgccggccaacccgacgagcaagac
ctggatgaaaaatatcccaatagacctcgcaatcatgccaacacgctgccattccatgat
ctgtttactgatcttttcaacccgctaagcgagaacaagaaacggcccaaggtatctggc
cctgcatcgcgtaggaaggtcggacctcatggaccatccaacctcacacctcaggacagt
cgccgcgatgtaatccaacgcttcatctctcgctggcgaaaagatgtcggcgatgacatt
tatccggcctttcgactcattgtgcccgacaaggaccgggatcgggccatgtatggactg
aaggaaaaagtcatcggcaagctacttgtgcgaattatgaaaattgacaaaaactctgaa
gatggcttcaatctactgaattggaagctaccggggcaaagcgccgcaagccgcatggct
ggcgactttgccggccgatgcttcgaggtgctttccaagagacccatgagggtcgaggtc
ggcgatatgcttattgaagaggtcaatgatcgactggaccaactatcagccgcacctaaa
gaagatcagcaacttcctatcctgactgaattctaccgacgaatgaacccagaggaactg
atgtggctcatacgcatcattctacgacaaatgaaagtaggcgccaccgagcggacgttt
ttcaacgtgtggcatcctgatgcagaaagactatttagcatatccagtagtctgcgccgt
gtctgctgggaacttcatgacccgaacatcaggctcgaaggtgatgaacggggagtttca
cttatgcagtgttttcagcctcagttggcgcaattccagatgcactcttttgagaagatg
gtgcaacgaatgagacccacagatgatgacccaacgttttggatcgaggagaaactcgac
ggagagcgaatgcaactgcacatggcatctgatgactccgttgagggagggaaacgattt
tgtttctggtctcgcaaggccaaggaatatacatacctctatggaaatggcttctatgat
ccaaatgggtccctcacccgtcatctgaaagacgcttttgttgatagcgtggataacatc
atcttagatggcgagatggtgacatgggatcccgagcaagatgcaccggtcccgtttggt
acattgaaaactgcagcgttggccgaaaagcgagacccgaattcgcacggaccgcggccg
ttgtttcgagtattcgatatactgtatctgaacgatcgagaattaacgcggtacacgtta
cgagatcgccgccgtgcgctcgagaaagctatacagcctgtccaccgaagatttgaaatc
catagttatcaggaggctaccacagctgccgaaatcgagccgatcctgcgtaaggtgata
gaggaggcatctgaaggcctagtgctgaaaaacccaaggtctccgtacagattaaacgag
cgtcatgatgactggatgaaagtaaaaccagagtatatgactgagtttggagaatctttg
gatcttgtagtcataggaggctactacgggtctgggaggcgtggaggtggcctttctagc
tatctatgcggcctacgcgttaacgaccccaacgcacagaatggagattctcccatgaag
ttctattcattctgcaaagtcggcggcgggtttaccgctactgactatgccaatatcagg
catcatacggacggaaagtggaagacatggaatccgaaaaagccaccgtccgagttcatc
gaactcgcaggtggagtcaccggtccgaaagaagtacctgatgaatggattaggccggat
gagtcggtcgtcgtttgcgttaaagctgcgtctgtgtcggttagcgatgaatttcgcatc
ggcctgacccttcggtttccgcgatttaagagactgcgaatggacaaggactggaagacg
gcgctctcagtacaggaattccttgatctaaagtccaatgtcgagcaagagcaaaaagaa
aaacagtttactgttgaaaacttccgcaagaaacgactcaaaatgacggctaaaaagcct
ttgacagtagctgggtacgatggtgataccactgtcgaatatgcaggaccagttaacaac
gtatttgacggattgaatttttttgtcatgaccgatacaaagacgccagagaagaaaaca
aaagcagagctggaacagcttgtcaagtcaaatggtggtcagattttccaaacacataca
gcagccccgaatactgtttgtattgcagatagaagaacggtcaaagttgcttcgatacaa
aaaagtggcagccaaaatatcattcggcctatatggctgtttgattgtatcaaacaaacc
gaagctgatgagaacctacccacatttctccttccatttgaacctaggcacatgttcttt
gccaaagaagatcagcaagataatatcgctgaaaacgttgacgaatacaacgacagctac
acacgaaacaccacggtcgaagagctaaaagccgtactcgaggatatgaagctcgataga
gccattgataccgaagcaatttcgcagatctcagcacgtctgtttgcgcaaactcaggaa
gagcacagccaaggcgccgccttgcccggttggatcttcaagggcttgacattatacttc
cactctccagaatcgccatcgccattgaattcgtccaactcagatatctctcaacggctt
caacttgctcgcagcctggccgaatttggcagcgctgacatcagcgaaactctagaaaca
ggccagagtaaaaagaaagatacaaagaccggcattacgcacatcgttgttccgagcccc
cattcgtcgagagaaggagaagaagaactggcttcccttcggaaaacgctttctaaactg
gtcagttcttctggatataaactcccgcatattgtgtcggtggattgggttgagcggagt
tggaaagagaagacgttgttggatgaagagaggtatgcaccatcctga
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