KEGG   Talaromyces rugulosus: TRUGW13939_06294
Entry
TRUGW13939_06294  CDS       T06879                                 
Name
(RefSeq) uncharacterized protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
trg  Talaromyces rugulosus
Pathway
trg03030  DNA replication
trg03410  Base excision repair
trg03420  Nucleotide excision repair
trg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:trg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TRUGW13939_06294
   03410 Base excision repair
    TRUGW13939_06294
   03420 Nucleotide excision repair
    TRUGW13939_06294
   03430 Mismatch repair
    TRUGW13939_06294
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:trg03032]
    TRUGW13939_06294
   03400 DNA repair and recombination proteins [BR:trg03400]
    TRUGW13939_06294
Enzymes [BR:trg01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TRUGW13939_06294
    6.5.1.6  DNA ligase (ATP or NAD+)
     TRUGW13939_06294
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     TRUGW13939_06294
DNA replication proteins [BR:trg03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    TRUGW13939_06294
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     TRUGW13939_06294
DNA repair and recombination proteins [BR:trg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TRUGW13939_06294
   NER (nucleotide excision repair)
    Other NER factors
     TRUGW13939_06294
   MMR (mismatch excision repair)
    Other MMR factors
     TRUGW13939_06294
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Synaptonemal_3
Other DBs
NCBI-GeneID: 55993789
NCBI-ProteinID: XP_035345340
LinkDB
Position
III:join(4379768..4379832,4379906..4381892,4381947..4382513)
AA seq 872 aa
MPEKKSRQATLGYVRDSQTTIGKFFGSGAAQESNGAPKRQTTLSFSNGNKGKDASKTEKA
EAEQEGNEADVDNTELKDEVSVSPSNGVKRDQEVVADENSDSDIQPATKRRRKTTKSPER
KKSAKGTSVDAASPPKPVKKASGEETPIAEDAAEPAEEVSASEEEDERPEVKKQQIEKVR
ATLESSGNDPYPDWKAGEPVPYAALCTTFSLIEMTTKRLVISAHASLFLNQVLRLTPGDF
LPTVQLMINKLAADYAGIELGIGESLIMKAIGETTGRSLAVIKADQHEIGDLGLVAAKSR
SNQPTMFKPKPLTVRGVHEGLLTIAKVQGHGSQDKKISGIKKLLSAADAATAGKGSKGVD
ITKDKGGPSEAKFLVRFLEGKLRLGLAERTVLVSIAQAVVAYEAALKGEKAPSTEQLSQG
EAVLKQTYSELPSYEVIIPAMLEHGILNLPRECKLQPGVPLKPMLAKPTKSITEVLDRFE
GKDFTCEYKYDGERAQIHYAAPDSVHQYPNATATLQKDSKGLSSIFSRNSEDLSKKYPDI
LAKLNTWIKPDVSSFVLDCETVAWDVQEKKVLPFQQLMTRKRKDVKAEDVKVKVCVFAFD
LLFLNGEPTVKKSLRERRQLLHDSFQQTEGEFAFAQHGNTNDLEEIQLLLDESVKASCEG
LMVKMLDTEESGYEPSKRSRNWLKVKKDYLAGLGDSLDLVVLGAYFGRGKRTSVYGAFLL
AAYNSSKQTFETVCNIGTGFSEAVLEELHKELSPLAIDRPKPFYEHSSVPKDQPDVWFEP
RLVWEVKAADLTLSPRYKAAADEVVGTTGGSGGGGGAGKGISLRFPRYIKARDDKKPEEA
TTTRAVAEMYRKQEAVAKENSGKKGVDDDFEY
NT seq 2619 nt   +upstreamnt  +downstreamnt
atgcctgagaagaaatcaaggcaagctacgctggggtacgtccgagattcgcaaaccaca
attgggaagttctttggttctggagccgctcaagagtccaatggcgcgcctaagcgacaa
acaacattatccttctccaacggcaataaagggaaagatgcatcaaagacggaaaaggcc
gaggctgaacaggaaggcaacgaggcggatgtcgataacacggaattaaaagacgaggtc
tcggtttcgccctccaacggagtaaagagggatcaggaagtagtggccgatgaaaattcc
gactcggacatccaacctgctactaagagacggaggaagaccaccaaaagcccggaacgc
aagaaatccgcgaaagggacatcagtcgacgctgcatctccccccaaacccgtcaagaaa
gcgtctggtgaagagactccaattgcagaagatgccgccgaacctgccgaggaggtgtcc
gcgagcgaagaagaggatgaaaggcccgaagtcaaaaaacagcagatagaaaaggttcgc
gccaccttagaaagctccggtaacgacccttatccggactggaaagctggggagcctgtt
ccgtatgctgctctatgtacaaccttctccctcattgaaatgaccacaaagcgtcttgtc
atttcagcgcatgcgtctctcttcctcaaccaagttctccgactcactcctggagacttc
ctgccaaccgtacaattgatgatcaacaaattggcggccgactatgctggtattgagctc
ggtatcggcgagtctctgattatgaaagccattggagagactaccggtcgaagtctggcg
gttatcaaagccgatcagcatgaaattggtgacttgggattagttgcggctaagagtaga
tcgaaccagcccacgatgttcaagccgaaacctctgactgtcagaggtgttcacgaaggg
cttttgacgatagcaaaagtccaaggtcacggatctcaagataagaaaatttctgggatc
aagaagcttctgtctgcagctgatgctgccactgccggcaagggtagcaagggagtggac
attaccaaggacaagggagggcccagcgaagcaaaattccttgttagatttttggaagga
aaattgagactggggttagctgaaaggacggttttggtttctattgcacaagcagtggtt
gcctatgaagccgccctcaagggggagaaagctcccagcaccgaacagctatcacaggga
gaagcagtgctcaaacagacctacagcgaactgccttcgtatgaagttattattccagct
atgctggagcatgggattctcaaccttcccagggagtgcaaattgcaacccggagtccct
cttaagcccatgttggcaaaacctacgaaatcgattactgaagtcctcgaccgattcgag
ggcaaagactttacttgcgagtacaaatatgacggggaacgggctcaaatccactacgcc
gcaccagactcggttcatcaataccccaatgccacggcaactttgcagaaagattccaag
ggactcagctcaatcttttcacgaaactcggaagatttgtcaaagaagtatccagacatc
ctcgcgaagctgaacacatggatcaaaccagatgtttcaagctttgttctggactgcgaa
actgtcgcctgggatgtccaagagaaaaaggttctccctttccagcagttgatgactcgc
aagagaaaggatgtgaaggcagaagatgtcaaagtcaaggtttgtgtctttgcgtttgac
ctccttttcttgaatggcgaacccacggtcaagaagagcctgcgcgaacgacgtcagctt
ctccacgattcttttcaacaaactgaaggagagtttgcctttgcccagcatggaaacacc
aacgatctggaggaaattcaacttttgttggatgaaagcgtcaaagcatcatgtgaggga
ctgatggtgaagatgttagacaccgaggaaagtggctatgagcctagcaaacgaagccga
aattggctcaaggtcaaaaaggactatctcgccggcctcggtgactctctagacctggtc
gttttaggagcgtatttcggccgcggaaaacgtacatcggtatatggcgctttcctcctt
gcagcgtataattccagcaagcaaacatttgaaactgtctgtaacattggaaccggattc
tccgaagccgtactggaggaactccacaaggaactctcccctcttgccatcgaccggccc
aaaccgttttacgagcactccagcgtacccaaggaccagccagacgtctggttcgagcca
cggctcgtatgggaagtaaaagcagcagacctcacgctcagcccacgctacaaagccgcc
gccgatgaagtcgtgggaaccacggggggtagtggtggtggtggtggtgccggcaaaggc
atctccctacgtttcccacgctacatcaaggcccgagatgataaaaagcccgaggaagca
accactactcgcgcggttgcagaaatgtatcgcaagcaggaagctgttgcaaaggaaaat
tctgggaaaaagggggttgacgatgattttgaatattga

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