Talaromyces rugulosus: TRUGW13939_07893
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Entry
TRUGW13939_07893 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
trg
Talaromyces rugulosus
Pathway
trg03022
Basal transcription factors
trg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
TRUGW13939_07893
09124 Replication and repair
03420 Nucleotide excision repair
TRUGW13939_07893
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trg03021
]
TRUGW13939_07893
03400 DNA repair and recombination proteins [BR:
trg03400
]
TRUGW13939_07893
Transcription machinery [BR:
trg03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
TRUGW13939_07893
DNA repair and recombination proteins [BR:
trg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
TRUGW13939_07893
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ssl1
C1_4
VWA_2
VWA
Motif
Other DBs
NCBI-GeneID:
55995383
NCBI-ProteinID:
XP_035346923
LinkDB
All DBs
Position
IV:join(3149198..3149435,3149486..3149840,3149901..3150657)
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AA seq
449 aa
AA seq
DB search
MVDSDEDYVGAVSEGEEEGEAHVVSAGAGTRARRRKQHGGAEWEVSRTWESVVEGADGTI
SSTVEGLLEAGKRKRRVYHANMRCNRLLRDTTPLQRGIIRHLMLVLDLSQSMAEKDLRPT
RYLLALRFAQEFVVEFFEQNPISQLGILGMKDGLAVRISDMSGNPTDHIVALQDLRASDP
KGLPSLQNALEMARGALFHTPSHGTREVLIIFGSLLSSDPGDIHQTLKSLVTDQIRVGVV
GLAAQVAICRELCAKTNGGDDTVYGVALNEQHFKELMMEVTIPPATHTYRQASNALLMMG
FPSRTVEAFPSLCACHSKPSCGGYLCSRCGSKVCGLPAECPACGLTLILSTHLARSYHHL
FPLINWVEVPWKRALQSSHCFACGTQFPSAPPQDQWEVSESNTKGMSVSSRYECSTCKNH
FCIDCDLFAHEIVHNCPGCQSNNLSVSHR
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggtcgattccgatgaagactatgttggcgcagtttctgaaggagaagaagagggcgag
gctcatgtagtctcagcaggcgctgggacgcgagcgcggcggaggaagcagcatggcggt
gccgagtgggaagtgtcacgcacctgggagtcggtcgtggaaggcgcggacggtaccatc
agctcgaccgtcgagggccttttggaggcgggcaagagaaagaggcgagtctatcacgct
aacatgcgttgcaacaggctgctccgagacaccacgccgctgcagcgaggcatcatccgc
cacctgatgctcgtgctcgatctctctcagtccatggcagaaaaggacctccgcccgacg
cgctacctgctggctctgcgctttgcccaggagtttgtcgtcgagttcttcgagcaaaac
ccgatatcgcaactggggattctcggcatgaaagacgggctggccgtccgcatcagtgat
atgagcggaaacccaaccgaccatattgttgcccttcaggatctgagggcgtccgatcca
aagggccttcctagtctccaaaatgcgctggagatggcccgaggggccctcttccacacg
cccagccatggcactcgagaagtcctgattatctttggatcactgctctcatccgacccc
ggcgacatacaccagactttgaaatcgctcgtcacagaccagatccgagtcggcgtcgtt
ggcctggctgcacaagttgccatttgccgtgagctctgtgccaagacaaacggaggcgat
gatacagtatacggcgttgctctgaatgagcagcactttaaagaactaatgatggaagtt
accattcccccggcaacgcatacatacagacaggctagtaatgcgcttttgatgatgggg
tttccgtcccgtacagtagaggcgttcccgtctctttgcgcgtgtcactctaaaccatct
tgcggaggatatttgtgctcacgatgcgggagcaaagtctgcggccttccagccgaatgc
cctgcatgcggtcttaccttgatcctctcgacacatttggcacgctcataccatcacttg
ttccccctcataaactgggttgaggttccctggaaacgagctctgcaaagctcccattgc
ttcgcctgcggcactcaatttccatcagctccgccccaggatcaatgggaggtttcggag
agcaacacaaaaggaatgagtgttagcagccggtatgaatgctcaacgtgcaaaaatcat
ttttgcatcgactgcgatctttttgctcatgaaattgtccacaactgtcctggctgccag
agcaacaacctgtcggtgtctcacaggtga
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