Talaromyces rugulosus: TRUGW13939_09425
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Entry
TRUGW13939_09425 CDS
T06879
Name
(RefSeq) uncharacterized protein
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
trg
Talaromyces rugulosus
Pathway
trg03013
Nucleocytoplasmic transport
trg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
trg00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
TRUGW13939_09425
03015 mRNA surveillance pathway
TRUGW13939_09425
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trg03019
]
TRUGW13939_09425
Enzymes [BR:
trg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
TRUGW13939_09425
5.6.2.5 RNA 5'-3' helicase
TRUGW13939_09425
Messenger RNA biogenesis [BR:
trg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
TRUGW13939_09425
mRNA cycle factors
Common to processing body (P body) and stress granule
TRUGW13939_09425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
DEAD
Viral_helicase1
UvrD-helicase
SLFN-g3_helicase
Helicase_RecD
PIF1
nSTAND3
AAA_22
AAA_16
ATPase
AAA_10
Motif
Other DBs
NCBI-GeneID:
55996908
NCBI-ProteinID:
XP_035348440
LinkDB
All DBs
Position
V:complement(join(2515627..2518645,2518701..2518969))
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AA seq
1095 aa
AA seq
DB search
MDAFTNMGNHLVSDSASTINADDGYSAVDPDESILGLTGGARRRRHDDEDDGSDILDDDD
MESVASVPVGGHARKQKIEEEKELPPHACAYCGIHNPSSVVKCLSCNKWFCSARGNTSSS
HIVNHLVRARHKEVQLHPSSSLGDTILECYNCGTKNVFLLGFIPAKSDTVVVLLCRQPCA
AMPSSKDMNWDTSRWQPLIEDRSFLPWLVSTPSDQEQLRARHLSPQMIAKLEEMWKDNSN
ATIADLETANSVDDEPAPVLLRYDDAYQYQNVFGPLVKIEADYDRKLKESQSQDGLIVRW
DLGLNNKHLASFVLPKLELGDVKLAVGDEMRLKYTGELRPKWEGVGYVIKIPNNQSDEVT
IELRAKGDHKSVPTECTHNFTADYVWKATSFDRMQYAMKTFAVDEMSLSGYLFHRLLGHE
VAAAPMKTQMPKKFSVPGLPELNGSQINAVKSVLQKPLSLIQGPPGTGKTVTSATIIYHL
AKINGGQVLVCAPSNVAVDQLCERIHRTGLKTVRVTAKSREDVESPVRFLSLHEQVRMND
SNIELAKLNQLKSELGELSSQDEKKFKQLTRAAEREILTNADVICCTCVGAGDPRLAKFK
FRTVLIDESTQSAEPECMIPLVLGCKQVVLVGDHQQLGPVIMNKKAAKAGLNQSLFERLV
ILGCSPIRLNVQYRMHPCLSEFPSNMFYEGSLQNGISVEHRLLPDVDFPWPVAQNPMMFW
SNLGNEEISASGTSYLNRTEAANVEKIVTRFFKAGVRPGAIGIITPYEGQRSYVVSSMQT
NGTFKKENYKEIEVASVDAFQGREKDFIVLSCVRSNDHQGIGFLSDPRRLNVALTRAKYG
LVILGNPKVLSKHPLWNYLLLHFKERKCLVEGPLSNLQESLVQFSRPKQAYRGPQRFQMA
YNHASSMASGMSNGRNGTRPEYHDSGSVVGYIPDDVSSVHGSAIGGVGISSGYPPMFQNF
TDTWPTLSGGRRANGMRAKGAPSVAGESVAATESDITGSVIDGKSGGGQGGVSLAGLSIN
DMTKQTSLSQSDRLKRYVESGGRDGYKPGVNDSGSIFGGSTASIRVPRVPGHVQDDDDAR
SVSTAFASQVGGNYD
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggacgcctttacaaacatgggaaaccatttggtttctgactcggcatcgacaatcaat
gcagacgatggttactccgctgtcgacccggacgagagcattttgggcctgaccggcggt
gcccgacgacgcagacacgacgatgaagacgacggatccgatattcttgatgacgatgac
atggagagtgttgcaagcgtccccgtcggtggccacgcacggaagcagaaaattgaagaa
gaaaaagaacttccccctcatgcttgcgcgtactgtggcattcacaatccaagcagtgtg
gtaaagtgtctctcctgcaacaagtggttttgcagtgcccgaggcaatacctcgtcttcg
catatcgtaaaccacctcgtccgcgcacggcataaagaagttcaactgcacccgagttca
tcccttggcgataccatactggagtgctacaactgcggaactaaaaatgtctttcttttg
ggcttcattcctgccaagtcagacacagtcgtcgttctcctttgccgccaaccatgtgcc
gccatgccatcttcgaaagacatgaattgggatacatctcgctggcagccgttgatcgaa
gaccgctcctttttaccttggctagtttcgacaccatccgaccaagaacagctacgagca
cgccatctaagcccacaaatgattgccaagcttgaggaaatgtggaaagacaactcgaat
gctactatcgccgacttggaaacggctaacagcgtcgatgacgagcccgcccccgtcctg
ctgcgctatgatgatgcctaccagtaccaaaacgtttttggtccgttggtgaaaatcgag
gccgactacgaccgcaagttaaaagaatcacagtcccaagatgggctcattgttcggtgg
gaccttggtctcaacaacaaacacctggcaagcttcgtacttccaaagctggaattaggc
gatgtgaaattggctgtgggcgacgagatgcgtttgaaatataccggagagcttcgtccc
aagtgggaaggagtgggatacgtgatcaaaatccccaacaaccagtccgacgaagtgact
atcgagttgcgtgccaagggcgatcacaagtccgttcccaccgaatgcactcataacttc
actgccgattatgtttggaaggctacctcgtttgatcgcatgcaatatgccatgaaaacc
tttgctgttgacgagatgagtctctcaggttatctgttccatcgtctcttaggccacgaa
gttgcggctgccccaatgaaaacccaaatgccaaagaaatttagcgttcccggtctacct
gaactcaacggtagtcaaatcaatgccgtgaaaagtgtcctccaaaagcctctcagtttg
attcagggtcctccaggaacaggtaaaacagtcacttccgccacgatcatttaccacctt
gcaaagatcaacggaggtcaagtcttagtttgtgccccttccaacgttgctgttgatcaa
ctatgcgagcgtattcaccggaccggtctgaagactgttcgtgtcaccgcaaagtctcgt
gaggatgtagaatcacctgtgcggttcctctcattgcatgaacaagttcgaatgaacgac
agcaacatcgaactcgccaagctcaaccaactcaagtcagaattaggagaattgtccagt
caagatgagaagaaatttaaacaacttacccgtgctgccgagcgcgaaatcctcaccaac
gctgacgttatctgctgtacttgtgttggtgctggcgatcctcgcctggctaagttcaaa
tttcgcacagttctcattgacgagtctacacagtcagcagagcctgaatgcatgattccc
cttgtcctaggttgtaaacaggtcgtccttgttggagatcaccaacagctcggtcctgtc
atcatgaacaaaaaggcagccaaggctggcttgaaccagtcactctttgaacggcttgtt
atcctaggctgctctccaattcgactgaacgtccaataccgtatgcatccttgcctttcc
gaatttccttccaatatgttctacgaaggctctctgcagaacggtatttcggtggagcac
cgtcttctcccggatgtggatttcccctggccggttgcacagaacccaatgatgttctgg
tcaaaccttggaaacgaagaaatttcggcctctggcacctcctacttgaatcggaccgaa
gctgctaatgtggaaaagatcgtgactcgtttcttcaaggcgggtgttcgaccgggagct
atcggtatcattactccgtacgagggccagcgcagctacgttgtgtcgtccatgcaaaca
aatgggactttcaagaaggagaactacaaggaaattgaggttgcatcagtagacgcgttc
caaggacgagagaaagatttcattgttctctcctgtgttcgttcaaatgatcaccaagga
attggtttcttgagtgatcctcgccgtctcaacgtcgcacttacgcgtgccaagtacggt
ttggtcatcctggggaaccctaaggttttgtcgaaacatcctctatggaactacctcctt
cttcacttcaaggaacgaaaatgtttagtcgaaggacccttgtccaatctccaggaatct
cttgttcaattcagtcgcccgaaacaggcctaccggggccctcagcgattccagatggcc
tacaaccatgcttctagcatggctagtggtatgtctaatggcagaaatggaacccgcccc
gagtatcacgattctggttctgtggttggttacatcccagatgatgtttcctctgttcat
ggttctgctatcggaggcgttgggatttcttcaggctatccgcccatgtttcaaaacttt
accgacacttggccgacgctgtcaggcggtcgtcgggctaatggcatgcgtgcaaaggga
gctcccagcgttgcaggcgagtcagtagctgccaccgagtctgacataactggaagtgtc
attgacggcaagagcggtggaggacaaggtggagttagcttggccggtttaagcatcaac
gacatgaccaagcagaccagtctcagccaatctgatagacttaagcgttacgttgagtct
gggggccgtgatggatacaagcccggtgtcaatgacagcggcagcatctttggcggtagc
acagccagcattcgagtacctcgtgtgcctggacatgttcaggatgacgatgatgctcgt
agtgtgtcgacagcatttgctagtcaggtgggcggcaactatgactga
DBGET
integrated database retrieval system
