KEGG   Talaromyces rugulosus: TRUGW13939_11227
Entry
TRUGW13939_11227  CDS       T06879                                 
Name
(RefSeq) uncharacterized protein
  KO
K04799  flap endonuclease-1 [EC:3.1.-.-]
Organism
trg  Talaromyces rugulosus
Pathway
trg03030  DNA replication
trg03410  Base excision repair
trg03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:trg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TRUGW13939_11227
   03410 Base excision repair
    TRUGW13939_11227
   03450 Non-homologous end-joining
    TRUGW13939_11227
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:trg03032]
    TRUGW13939_11227
   03400 DNA repair and recombination proteins [BR:trg03400]
    TRUGW13939_11227
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:trg04147]
    TRUGW13939_11227
DNA replication proteins [BR:trg03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    TRUGW13939_11227
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     TRUGW13939_11227
DNA repair and recombination proteins [BR:trg03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TRUGW13939_11227
Exosome [BR:trg04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   TRUGW13939_11227
SSDB
Motif
Pfam: XPG_I XPG_N 5_3_exonuc
Other DBs
NCBI-GeneID: 55998705
NCBI-ProteinID: XP_035350228
LinkDB
Position
VI:complement(join(2462799..2463320,2463379..2463936))
AA seq 359 aa
MSIYSFLIAVRSDGQQLMNESGETTSHIMGMFYRTLRMVDNGIKPLYVFDGAPPKMKSGE
LAKRTARKREAHEAHEEAKETGTAEDMEKFSRRTVRVTREHNDECKKLLKLMGVPYIEAP
TEAEAQCAVLARAGKVYAAASEDMDTLCFESPILLRHLTFSEQRKEPIQEIHLDKALEGL
DMERSQFIDLCILLGCDYVEPIPKVGHQTALKLIREHGTLEKVVEYMENDPKKKYTIPED
WPYKEARELFFNPDVRDASDPACDFKWENPDIDGLIDFLVKEKGFSEDRVRNAAARLQKN
LKTAQQARLEGFFKPVAKTDAEKASLKRKHEVKIEEQKKRKKEDQKAKKEAKARPRGAV
NT seq 1080 nt   +upstreamnt  +downstreamnt
atgagcatctacagcttcctcattgcagtgcgctcggatggccaacagctcatgaacgaa
agcggcgagactacttctcacataatgggcatgttctaccgcactctacgaatggtcgac
aacggcatcaaacctctttacgtgtttgacggtgctcctccgaaaatgaagagtggtgag
ctcgccaagcgaacagcgcggaagcgggaagcacacgaggcccacgaggaggccaaggaa
accggaactgcagaagacatggagaagttctcgcggcgaactgttcgcgtcactagggag
cacaacgacgagtgcaaaaagctgctgaagctgatgggtgtgccttatatcgaagcaccc
accgaggcggaagctcagtgtgcggttctggcgcgtgccggcaaggtctacgctgcagcc
tcggaggatatggatactctctgttttgagtcgcccattctgcttcgccaccttactttc
agtgagcagaggaaggagccgattcaggaaatccacttggacaaggctctagagggtctt
gacatggagcgcagtcagttcatcgatctgtgcattctccttggttgcgattatgttgag
cccattcccaaggtcgggcatcaaacagcgctgaagctaatccgcgagcacgggacactg
gaaaaagtggttgaatacatggagaatgatcccaaaaagaaatacacgatccccgaggac
tggccatacaaggaagcccgagagctgttcttcaacccggacgtgagagatgccagcgac
ccagcatgcgacttcaaatgggagaatcccgatattgatgggttaattgattttctggtc
aaggaaaagggcttcagcgaagaccgggtgcgcaacgcggcggcgcgcctgcagaagaac
ctaaagacggcgcaacaggctcgtctagaagggtttttcaaacccgtggccaagacggac
gcagaaaaggccagcctgaagcgcaagcatgaagtgaaaattgaagagcaaaaaaagcgc
aagaaggaagatcagaaagcgaagaaggaagccaaggcgcgaccccgcggggccgtttga

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