Treponema sp. OMZ 838: JO41_02895
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Entry
JO41_02895 CDS
T03454
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
trm
Treponema sp. OMZ 838
Pathway
trm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
trm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JO41_02895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
trm03400
]
JO41_02895
DNA repair and recombination proteins [BR:
trm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JO41_02895
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
JO41_02895
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
AAA_30
UB2H
AAA_22
Flavi_DEAD
Kinesin
HPF1
SLFN-g3_helicase
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
AIW88873
LinkDB
All DBs
Position
complement(626887..628878)
Genome browser
AA seq
663 aa
AA seq
DB search
MKQFKLMADYQPAGDQGDAIRQLADGILAGDRFQTLKGVTGSGKTFTMANIIQAVQKPTL
IISHNKTLAAQLYREFKGFFPENAVEYFVSYYDYYQPEAYVPARDLYIEKDAAINDEIDR
LRLSATFSLMERRDVIVVSTVSCIYGLGLPESWRDLRITIEKGQTVDPGKLKKQLISLQY
ERNDAVLERGRFRVKGDVMEIFPAYMEEAYRIEFDWEEIVRIRRFSPLTGEVSQEYEELS
IYPAKHFVMPENAIPNAIERIKQELDARLETLTAQGKLFEAERLKTRTEYDIEMLSEMGH
CPGIENYSAPIANRKPGEPPATLFHYFPKDFLLFMDESHVTFPQIGAMYEGDRSRKQNLV
DFGFRLPCALDNRPLKINEFETMLNQAVFVSATPGPKELQYSTRVVEQLIRPTGLLDPLI
EIHPSEGQMEHIYGEVKKRIAKDERSLILTLTKKMAEDLTDYLTGLGLKVKYIHSEVETI
ERVEILKGLRAGEFDVLIGINLLREGIDLPEVSFIGILDADKIGFLRSTTSLVQIVGRAA
RNANGSVVMYADRISDAMKETIEETTRRRSIQQAYNDEHGITPKTIKKSIEDILVRETEI
KKEAARAETEPLVNSFNILNPADRKKLIKKLEAQMAEYADMLLFEEAAVVRDKIDEIKRL
GSF
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgaaacagtttaaactgatggcggattatcagcctgcgggtgaccaaggcgatgcgata
cggcagcttgcggacggcatacttgccggcgaccggttccaaacgctcaaaggtgttacc
ggttcgggcaagacttttacgatggcgaatatcattcaagcggtgcaaaagccgacgctg
attatcagccacaacaagacgcttgcggcgcagctctaccgcgagttcaaaggttttttt
ccggaaaacgccgtcgaatactttgtttcatactatgattactaccagccggaggcttat
gtcccggcgcgagacctctatatcgaaaaagacgctgcgattaacgatgagatagaccgg
ctgcggctttcggcaacattcagtttgatggagcggcgggatgttatcgttgtgtcaaca
gtgtcgtgcatttacggcttaggtttgcccgaatcgtggcgcgatttacgcattaccata
gaaaaagggcagaccgttgatcccggtaaactcaaaaagcagctgatcagtctgcaatat
gagcgcaacgatgcagtgttggaacgcggacggttccgtgtgaagggcgatgtgatggaa
atattccctgcttatatggaagaagcctaccgcatcgagtttgactgggaagagattgtg
cgtatccgccgctttagcccgctgaccggcgaagtgagccaagaatacgaagagctttcg
atttatccggcaaagcactttgttatgccggagaatgctatccccaatgccatcgagcgg
attaagcaggagcttgatgcccgtttggaaacgctcacggcgcagggaaagctctttgag
gctgaacggctgaaaacccgtaccgaatacgatatcgaaatgctctccgagatggggcat
tgcccggggatagaaaattattcagcgccgatcgcaaaccgcaaacccggtgagccgcct
gcaacgctttttcattactttccaaaagacttcctcctttttatggatgaaagccacgta
acctttccgcagatcggcgcgatgtacgaaggcgaccgcagccgcaagcagaaccttgtg
gacttcggcttccggctcccctgcgcgctggataatcgcccgctcaaaatcaatgagttt
gaaacaatgctcaatcaggcggtttttgtttccgcaacacccggacccaaagaattgcaa
tattctacccgcgttgttgagcagctcatccgcccgaccggtctgttagacccgctcatc
gaaattcatccgagcgaggggcagatggagcatatctacggtgaggtgaaaaagcgcatc
gcaaaggatgagcggagtctcattctcaccctcaccaagaagatggcggaagaccttacc
gactacctcaccggtctgggcttaaaggtaaagtacattcacagcgaggtggaaaccatc
gagcgggtagaaatcctcaaaggcttgagggcgggtgagttcgatgtgctcatcggaatt
aacctcctgcgggaaggcatcgacctaccggaagtgtcgtttatcggtatcctcgacgcg
gataaaatcggctttttgcggtcaaccaccagcctcgtacagattgtcgggcgggcggcg
cgtaatgccaacggcagcgtggtgatgtatgccgaccgtatcagcgacgcgatgaaggaa
acaatagaagaaaccacccgccgccgttcaattcagcaagcctacaacgatgagcatggc
attacgcctaaaaccataaaaaaatcgattgaagatattttggtacgcgaaacggaaatc
aaaaaagaagccgcccgcgccgaaaccgagccactcgtcaacagttttaatattctgaac
cccgccgaccgtaaaaagcttatcaaaaagctcgaagcgcagatggctgaatacgccgat
atgctcctctttgaagaggcggcggttgtacgtgataagattgacgagattaaaagattg
ggctctttttga
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