Trichomycterus rosablanca: 134302594
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Entry
134302594 CDS
T09921
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
trn
Trichomycterus rosablanca
Pathway
trn03013
Nucleocytoplasmic transport
trn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134302594 (upf1)
03015 mRNA surveillance pathway
134302594 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134302594 (upf1)
Enzymes [BR:
trn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
134302594 (upf1)
5.6.2.5 RNA 5'-3' helicase
134302594 (upf1)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
134302594 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
134302594 (upf1)
BRITE hierarchy
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
134302594
NCBI-ProteinID:
XP_062843812
LinkDB
All DBs
Position
25:15025487..15039840
Genome browser
AA seq
1105 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTQGQTQSQLDNQVNG
PEGVLQNGDDPVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHV
IKVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLA
LHNQIRNMDSMPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPSLSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGARFMSTAMYDAREAMIPGSVYDRSSTGFAVTGRPSNMYFQTHDQIGMIGAGPNP
MASMNIPIPFNLVMPPMPPPGYLGQVNGPAVGRGAPKGKTGGRGARQRNRGIGNHGSGQA
NMTSSQASQDLVSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQMDV
ALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtagaggcgtacgggccgagctctcagactctcaccttcctggacacggaggaa
gccgagctgctgggagccgacacgcagggctccgagttcgagttcaccgacttcaccctg
cccagccagactcaaacccagggtcagacccagagccagctcgataaccaggtgaacggg
ccagagggagtgctgcaaaacggagatgatcctgttgtgaaaaccagtcagcttctggct
gagctgaattttgaagaagatgaagaagacacctattacacaaaagatcttccagtgcat
gcatgcagctactgtggcatccatgatcctgcctgtgtggtatactgcaacaccagtaag
aagtggttctgcaatggacgtggcaacacctctggcagccatattgtcaatcatttggtg
agggccaagtgtaaagaggtaactctgcataaagatggccctttgggagagactgtgctg
gagtgttacaactgtggctgtcggaatgttttcctcctgggcttcatcccagccaaggca
gattctgtggtggtgctcctatgcaggcagccatgtgctagtcagagcagtctaaaggac
attaactgggacagctcccagtggcagcctttgatccaggatcgatgctttctgtcttgg
ctggtaaagatcccgtctgagcaggagcagcttagggcacgtcagatcaccgctcagcag
atcaacaaactcgaggagctttggaaggagaaccccactgcaacacttgaagatttggag
aagcctggtgtggatgaggagccccagcatgtcctgctgcgctatgaggacgcctatcag
taccagaacatctttggtccactggtcaaactggaggcagattatgacaaaaagcttaaa
gagtcccagacccaagacaatattactgttaggtgggatttgggactgaataaaaagagg
attgcttatttcacccttccgaagacggattcaggtgacatgcgactgatgcaaggggac
gagatctgtctgcgttataagggagacctggctcctctctggaaggggattggacatgtc
atcaaggttcctgacaattatggtgatgagattgctatagagctaaggagcagcgctgga
gcccctgtggaggtgccacacaacttccaagtggattttgtttggaaatctacttctttt
gatcgcatgcagagtgcattaaaaacatttgcagtggatgagacctcagtgtccggctac
atctaccacaagctacttggtcacgaggttgaggatgtgattattaagtgccagctaccc
aagcgcttcactgcccaaggccttcctgaccttaatcattcacaggtgtatgctgtgaag
actgtgctgcagcgtcctctcagtctgatccaggggcctcctggtacaggcaaaactgtc
acctcagcaaccattgtttaccacctggctagacagggcaacggaccagtactggtgtgt
gctcccagtaatattgctgtagaccagctgactgagaaaatccaccaaaccggactgaag
gtggtgcgtctctgtgccaagagcagggaggccatagactctcctgtgtccttcttggct
ctgcacaatcagattcgcaacatggacagcatgccagagctgcaaaaactgcaacaactg
aaggacgaaactggagagctgtcttcctcagatgagaagcgctacagagccctgaaacgt
actgcagaaagggagctgctgatgaatgctgatgtgatctgttgtacatgtgtgggcgcg
ggtgatcctcgcctggctaagatgcagttccgctccattctgatagacgaaagcacccag
gccactgagccagagtgcatggtgcctgtagtgctgggagccaagcagcttattttagtg
ggtgatcactgccagttgggcccagtggtgatgtgtaaaaaggcagccaaggccggtctt
tcacagtccttatttgagagactggtggtgctgggcatcagacccatccgcctacaggtc
caataccgtatgcacccctcactcagcgcctttccctcaaacatcttctatgaaggatcg
ctccagaacggagttactgctgctgaccgcatcaagaaaggatttgattttcagtggcct
cagccagataagcccatgttcttctatgtgacacaaggtcaggaggaaattgcgagctca
ggcacctcctatctcaacaggactgaggctgcaaatgtggagaagatcactacacgtctg
ctgaaagctggagctaaacccgaccagatcggcattattaccccgtatgagggccaacgc
tcgtacctggtgcagtacatgcagtttagtggctccctgcacaccaagctctaccaggag
gtggagattgccagcgtggatgcattccagggccgtgagaaggactttatcatcctgtcc
tgtgtcagggctaatgagcaccagggcatcggctttctcaatgacccacgcaggctaaac
gtagcccttaccagagctaggtatggtgtgatcattgtgggaaaccctaaagctctctcc
aagcagccactctggaaccacctgctgaactactacaaggagcagaaggtgctggtggag
ggacctctaaacaacctgagagagagtctgatgcagttcagcaaacctcggaagctcgtg
aacacaataaatccgggagcccggtttatgagcactgccatgtacgatgccagggaggcc
atgatccctggatcagtgtatgaccgcagcagcactggttttgctgtcacaggtcgtcca
tcgaacatgtacttccagactcatgaccagattggcatgattggtgcagggccaaaccca
atggcctctatgaacattcccatcccatttaacctggtcatgcctcccatgcccccacca
ggatacctgggccaggttaatggccctgctgttggccgtggtgctccaaagggtaagacg
ggtggacgtggggcgcgtcagaggaatcgtggcattggcaatcatggcagtggccaggcc
aacatgacaagcagccaagctagtcaggatctggtgtctcagcccttctcccagggccct
ttgacccagggttacattaccatgagccagccttcacagatgagccagccaggcctgtct
cagcctgaactctcccaggacagttacctgggtgatgagtttaagtcacagatggacgtg
gcactgtcccaagactccacttaccagggtgaacgggcataccagcatggaggagtgacc
ggactctcgcagtactag
DBGET
integrated database retrieval system
