Trichomycterus rosablanca: 134312542
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Entry
134312542 CDS
T09921
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
trn
Trichomycterus rosablanca
Pathway
trn03013
Nucleocytoplasmic transport
trn03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
134312542 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
134312542 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134312542 (thoc1)
03041 Spliceosome [BR:
trn03041
]
134312542 (thoc1)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
134312542 (thoc1)
Spliceosome [BR:
trn03041
]
Complex C
Other components
EJC/TREX
134312542 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
134312542 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
134312542
NCBI-ProteinID:
XP_062850625
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All DBs
Position
4:complement(54716489..54742058)
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AA seq
649 aa
AA seq
DB search
MAAVVYKLSESREKLTAAVTTALDLQSCKPLTGVFDHIPGNEAERKSILDQTLRSVLEQH
IVKQADVEDHLSLICISITAVTEGICSAFTPFVLLADVLDCLPLDQCDRIFSFVEENVST
WKSSSFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQFN
LENVTVFNKSEEESTLGQQSSELKEDGMEEGEMGDEEAPAPCSIPIDYNLYRKFWMLQDY
FRNPVQCYEKISWITFVKYSDETLAVFKSFKLDDAQASKKKREEMQTSGGEHVYFAKFLT
SEKLMDLQLSDSNFRRHLLLQYLILFQYLRGQVKFKSSTYVLNDDQSSWMEDTTKLVYQL
LRETPPDGDQFSTMVEHILNTEENWNAWKNEGCPSFVKERPTESKPARPGRKRAAPEDFL
SKGTDRRVAGGDELTKLWNLNPDNMEACRSESREFMPSLEDFFVEAIEQADPANMVEDQY
KVVKNSNYGWRALRLLSRRSPHFFQPTNQQFKSLDEYLENMVIKLAKELPKDLPSEEIKT
GEEEDENGDNLLKESNDSPGIQMKPVTNSQMDVIAVKLGARWKLLAVQLDVKEAEMSDIE
ADSDDVQLQAKMMLVSWQDREGTQATMESLVTALNAAGFSDIAQEFSEN
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atggccgctgttgtgtataagctgagtgagagcagagagaaactgacggccgccgtcaca
accgccctggacctgcagagctgcaaaccgctgaccggcgtgttcgatcacatccccgga
aatgaggcggagaggaagagcatcctggatcagacgctgcgcagcgtcctggagcagcac
atcgtgaagcaggcggacgtggaggatcatctctcactcatctgcatcagcatcaccgcc
gttactgagggaatctgctcggccttcacgccgttcgtgctgctggccgatgttctggac
tgcctccctctggatcagtgtgacaggatcttcagcttcgtcgaggagaacgtctccacg
tggaaatccagttccttctactccgcggggaagaactacttactgaggatgtgcaacgat
cttctgcggcgtctgtccaagtcccagaacacggtgttctgcgggaggatccagctcttc
ctggcgcgtctcttccctctgtctgagaaatcaggactcaacctgcagagtcagtttaac
ctggagaacgtcaccgtgttcaataagagcgaggaggagagcacgctcgggcagcagagc
tcagaactgaaggaagatgggatggaggaaggagagatgggtgatgaagaggctcctgct
ccatgctccatccccatcgactataacctctacaggaagttctggatgctgcaggattac
ttcaggaacccggtgcaatgctacgagaagatctcctggatcacctttgtcaagtactcg
gacgagacgctggcggtgttcaagagcttcaaactggacgacgcccaggcctccaagaag
aagagggaggagatgcagacgtccggaggagaacacgtctacttcgccaagttcctcacc
agcgagaagctgatggacctgcagctgagcgacagcaacttcagacgccacctcctgctg
cagtatctcatcctcttccagtacctccggggtcaggtcaagttcaagagctccacctac
gtcctgaacgatgatcagagctcctggatggaggacaccaccaagctggtctatcagctg
ctgagagagactccgcccgacggtgaccagttttccacgatggtggagcacatcctgaac
acggaggagaactggaacgcctggaagaacgagggatgtcccagcttcgtcaaagagaga
cctacagagtctaaaccggctcgacccggcaggaagcgagcggcaccggaggacttcctg
tctaaaggaacagatcggagagtcgcgggaggtgacgagctgaccaagctgtggaacctc
aatccggacaacatggaggcctgcagatcagagagcagggagttcatgccgtcgctggag
gacttcttcgtggaggccatcgagcaggctgacccggccaacatggtggaggatcagtac
aaggtggtgaagaactcgaattacggctggcgcgccctccgcctcctctcgcgccgcagc
ccacacttcttccagcccaccaatcagcagttcaagagtctggacgagtatctggagaac
atggtgatcaaactggctaaagagctgcccaaagatcttccatcagaggagattaagacg
ggagaggaggaggatgagaacggagacaacctactcaaagaaagcaacgacagtccaggt
atccagatgaagccggtgaccaacagtcagatggacgtgatcgccgtgaagctgggcgcg
cgctggaagctcctggccgttcagctggacgtgaaggaggcggagatgagcgacatcgag
gccgacagcgacgacgtgcagctccaggcgaagatgatgctggtgtcctggcaggaccgc
gaggggacccaggccaccatggagagcctggtcacggcgctgaacgccgccggcttctcc
gacatcgcgcaggagttcagcgaaaactga
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