Trichomycterus rosablanca: 134318481
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Entry
134318481 CDS
T09921
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
trn
Trichomycterus rosablanca
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
trn01009
]
134318481 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134318481 (hdac6)
04131 Membrane trafficking [BR:
trn04131
]
134318481 (hdac6)
03036 Chromosome and associated proteins [BR:
trn03036
]
134318481 (hdac6)
Enzymes [BR:
trn01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
134318481 (hdac6)
Protein phosphatases and associated proteins [BR:
trn01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
134318481 (hdac6)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
134318481 (hdac6)
Membrane trafficking [BR:
trn04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
134318481 (hdac6)
Chromosome and associated proteins [BR:
trn03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
134318481 (hdac6)
BRITE hierarchy
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
134318481
NCBI-ProteinID:
XP_062855523
LinkDB
All DBs
Position
7:complement(40393775..40422347)
Genome browser
AA seq
1104 aa
AA seq
DB search
MDSGLDPKPKSSSRLPRKTPQNAKRENKRSLKPSLQEARNKGRKNRSKAEEKLTNQLKNM
SLQVKPKAVGTGLVYSDVFTRYHCLWDSSHPECPERVTAIIKTMETEGLRSRCVPVETRS
ACEEELTLVHTKEYVDLMKSTQTMTEEELKSVSDRYDSVYLHPDSFSCACLASGSVLQLV
DKVMTSELRNGFCVCRPPGHHAQAAMMNGYSMFNNVAIAARYAQKQHGVERVLIVDWDVH
HGQGIQYVFQEDPSVLYFSIHRYEGGSFWPHLPESDSSTVGSGPGEGYNINVPWNKTGMQ
DGDYAAAFQRLLLPLAYEFQPQLVLVAAGFDSVAGDSKGEMGASPQCFSVLTHMLMGLAQ
GRVVLALEGGYNLQATAEGACASLRSLLGDPCSHLSSPGAPSESALKSISETVAALYPFW
TSLQTLEGGPLSEADHLPSAVCVEKLESSMSGTGLVYDERMMEHHNMWDGHHPELPQRIS
RIFSLHEDLGLTDRCQGIPARLATEEELSLCHGLEHIATIKHTEQMKPRDLFRLGNDYNS
VYLSKESYKCALLAAGGCFNVAQSILTGQVRNGVAIVRPPGHHAERDTACGFCFFNTASL
TARYAQSITRKNLRVLILDWDVHHGNGTQHIFEEDDSVLYISLHRYEDGTFFPCSEDADY
DKVGRGKGAGYNVNVPWNGAKMGDPEYLAAFHHVVMPIAREFAPELVLVSAGFDAARGDP
LGRYNVTPECYAHLTHQLLSLASGRVLVMLEGGYNLTSISESMAMCTSMLLGDAPPLLPP
APAPHPSACVSINNVLRAHAPYWKSLRIQIPESLRLSLPSPKPKSKRTPGGKAKNSPRHI
TPVQSPNQEQLQRTSAITSPASPSTTQEDSGLDELTQGLHSLDLSACASAGSSPACVAVG
GARPKVKLGTQGEAVQEESPTRVMQGGREESGVTAESTPIKEEKLSVPEAAEEADSGALG
DLDSSVLEGACGYTPKSVFEVVCGEVNMGGDTMFAVEPLSWCPHLDSVHPVPAGGIDVFR
PCEECGAESENWICLCCYKVLCGRFVNEHMVTHGQESTHPLVLSFADLSVWCYPCESYVH
NQVLYEAKNAAHLAKFGEEMHPIN
NT seq
3315 nt
NT seq
+upstream
nt +downstream
nt
atggattctggattagatccaaagccaaagagctcgtctcgcttgccacggaaaacgcca
caaaacgccaagagagagaacaaacgcagcctcaaacccagtctgcaggaggccaggaat
aaaggtcgaaagaaccgaagcaaagcagaagagaaattaaccaaccagctcaaaaacatg
agtttacaggtcaagccaaaggcggtcggaacgggtctcgtttactcggacgtcttcacc
cgatatcactgcctgtgggactccagccaccctgagtgtccggagagagtgacggctata
ataaaaacgatggagacggaggggctgcggtctcgctgcgtccccgtggagaccagatct
gcgtgtgaagaggagctcacactcgtgcacacgaaggagtacgtcgatttgatgaagtcg
actcagacgatgacggaggaggagctgaagtccgtttccgatcgttatgattccgtctac
ctccatcctgactctttctcatgtgcctgtctggcgtccggctccgtcctccagctggtc
gataaggtgatgacatcagagctgcgtaacggcttctgcgtgtgcaggcctccgggacat
cacgcccaggctgccatgatgaacgggtactccatgtttaataacgtcgctatagcagca
cgctacgcccagaaacagcacggcgttgagcgggttctgattgtagactgggatgtgcat
cacggtcagggaatccagtacgtcttccaggaggatcccagtgttctgtatttttccatc
catcgttatgagggcggctctttctggccccacctgcccgagtcagacagcagcacggtg
ggttcgggaccaggcgagggctacaacatcaacgtgccctggaataagacaggaatgcag
gatggagactacgctgctgcattccagagacttctgctgcccttagcctacgagtttcag
cctcagctcgtgttggtggcagcaggctttgattctgtggctggtgattccaagggtgag
atgggtgccagtcctcagtgtttctccgtactgacccacatgctgatgggcctggcacaa
ggacgagttgttctcgctctggagggaggctacaaccttcaggccacggcagagggagcc
tgtgctagtttgcggtcactgctgggggatccctgctctcacctgagctcacctggagcc
ccaagtgaaagcgcactgaagtccatctctgagaccgttgctgctctgtacccgttctgg
accagcctccagactctggagggaggccctctctcagaggctgaccacttaccttcagca
gtgtgtgtggagaaactggaatcttccatgtcaggaactggtctcgtgtatgatgagcgc
atgatggagcatcacaacatgtgggacggccaccatcctgaacttcctcagagaatctct
cgcatcttctctctccatgaggacctggggctcacggaccgctgccaggggataccagcg
cgtttagccaccgaggaggaactttcactctgtcacggtctggagcacattgccactata
aagcacactgagcagatgaagccccgagatctgttcaggctgggaaatgattataactct
gtgtacctcagtaaagagagctacaagtgtgcactgctggctgctgggggctgttttaat
gtcgctcagtccatcctcaccggtcaggtgaggaatggcgtggccatcgtgcgcccgcct
ggccatcatgccgaaagagacaccgcctgtggcttctgcttcttcaacactgcctctctg
actgcccgctatgcccagagcatcactcgcaaaaacctgcgcgtcctcatcctcgactgg
gacgtgcaccatggcaacggcacccagcacatcttcgaggaggatgacagcgtgctctac
atctctcttcatcgctacgaggacggcacgttcttcccctgttccgaggatgccgattac
gataaagtgggcagggggaagggcgcgggctataacgtcaacgtaccctggaacggagct
aaaatgggcgacccagagtacctggcggcttttcaccatgtggtgatgcctatagcacga
gagtttgctcccgagctggtgctcgtgtcggccgggttcgatgccgctcgtggcgatccg
ctgggcaggtacaacgtgactcctgagtgctacgcacacctcacccaccagctgctgagc
ctggcgtctggacgagtcctggtcatgctggagggcggctacaacctcacctccatctcc
gaatccatggccatgtgcaccagcatgctcctgggtgacgcgcctccgctgctacctcct
gcgcccgctcctcaccccagcgcctgcgtctccatcaacaatgtcctgcgagcgcatgcc
ccctactggaagtctctcagaatacagatcccagagtctctgcgcttgtctctgccttct
ccaaaacccaaaagcaagcgaacgccgggaggaaaagccaaaaactctccacgccacatc
accccagttcagagtcccaaccaggagcagctacagcgaacctcagcgattacctcgcca
gcatcgccctccaccacccaggaggactctgggctggacgagctcactcagggcctgcac
tctctggatctcagcgcctgcgcgtccgctggatccagccccgcctgcgtcgccgtggga
ggggcgagaccgaaagtcaagctcggcacgcagggggaggccgtgcaggaggagtcgccc
accagggtgatgcagggtggcagggaggagagcggggtgacggccgagtccacgcccatc
aaagaggagaaactgtcagtccctgaagcagcggaggaagcggactccggtgccctgggt
gatttggacagctctgtgctggagggagcgtgtggatacaccccgaagtctgtcttcgag
gttgtgtgtggtgaagtcaacatgggtggggatactatgtttgcagtggaacctctatca
tggtgcccacacctggattctgtgcatccggtgccagcagggggcatcgacgtgtttcgg
ccgtgcgaggagtgtggagccgaatctgagaactggatctgcctgtgctgctataaggta
ctgtgtggacgctttgtgaacgagcacatggtgacccacggccaggagtccacacaccct
ctggttctgagttttgccgacctgtcagtgtggtgctacccctgcgagtcctacgtccac
aatcaggtgctgtatgaagctaagaacgcagctcatcttgccaagttcggagaagaaatg
catcctattaattaa
DBGET
integrated database retrieval system
