Trichomycterus rosablanca: 134318888
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Entry
134318888 CDS
T09921
Symbol
upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
trn
Trichomycterus rosablanca
Pathway
trn03013
Nucleocytoplasmic transport
trn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
134318888 (upf3b)
03015 mRNA surveillance pathway
134318888 (upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trn03019
]
134318888 (upf3b)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
134318888 (upf3b)
mRNA cycle factors
P-body specific factors
134318888 (upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
134318888
NCBI-ProteinID:
XP_062855905
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All DBs
Position
8:complement(10061497..10066325)
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AA seq
467 aa
AA seq
DB search
MKEDKENTCPREKRVEIKCEDNEKSERPNKEKKEAMTKIVIRRLPPSLTKEELEEQLQPL
PDVDYLEFFSSDTSLYPHLFARAYLNFKNQDDIVLFRDRFDGYVFIDNRGQEYPAVVEFA
PFQKIAKKKSKKKDAKIGTIDEDADYKRFLELYNGDDEKLSSTPETLLEEIEAKSKELFA
KKTTPLLDFLKNKQRIREEKKEERRRRELERKRLRDEERRKWREEDRRKRKEAEKLKKAE
KAPDKDRDQPKEDQPKIKLLKKPEKTENCDTEKPKEKPKKQDRDKLKDDRVSAGDTRKRQ
NGEHKEDKTKRFEEDGQKDHRERDADRERDRERERERERRQKEKERLRRQDEERRRRRER
QDGENTYKRREDEGKREKEYVWEKKKNENTAVSSGHAQADRFEKPSKDGKKEDSVRKDRL
RNKDRPAIQLYQPGARNRNRGAGARDSQEGEKKAEKDVKNTQEKGEE
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaggacaaagaaaacacttgtcccagagaaaagagagtggaaattaaatgtgaa
gacaatgaaaaatcggagagaccaaataaagagaagaaggaggccatgacaaagattgtc
atccgacggctccctccaagtctgactaaagaagagttggaagagcagttacaacctcta
ccagatgtggattatcttgagtttttctctagtgacaccagcctctatcctcacctcttt
gcaagagcatatcttaatttcaagaaccaggatgacattgtactattcagagaccgtttt
gatggatatgtcttcattgataatcgaggacaagagtatcctgcagttgttgagtttgca
cctttccaaaagattgctaagaagaaaagtaagaaaaaggatgccaaaattggaacaatt
gatgaagatgctgattataaaagatttttggagctttacaatggtgacgacgagaaattg
tcttctacgcctgagacattgttagaagaaatagaggctaaatcaaaggaactgtttgcc
aagaaaacaactcctctcttggatttccttaaaaacaaacagagaataagagaggaaaag
aaagaggaaagaagaaggagagagctggagcgcaaacgcctgcgcgatgaagaacggcgt
aagtggagagaagaggacagaagaaaacgcaaagaagccgagaagttaaaaaaagctgaa
aaggcacctgacaaagacagggaccaacctaaagaggatcagccaaaaattaagctcttg
aagaagccagaaaaaacagagaattgtgatactgaaaagccaaaagaaaagcctaaaaaa
caagaccgagacaaactaaaggatgatagagtttcagcaggagatacaaggaaacgtcaa
aatggagaacacaaagaggataagacaaaaagattcgaagaggatggacagaaggaccac
agggagcgggatgccgacagagagagagaccgcgaacgtgaaagagagcgggaaagacgt
cagaaagagaaggagcgcctcaggaggcaggatgaagagcgccggaggaggagggagcga
caagatggggaaaacacatacaaaagaagagaagatgaggggaaaagagaaaaggaatat
gtttgggaaaagaaaaagaatgagaatacagctgtgtcttctggccacgctcaggctgac
agatttgaaaagccctctaaggatggtaaaaaggaagatagtgtgagaaaggatcgtttg
agaaacaaggatcgccctgccattcagctgtaccagccaggagcaagaaaccgcaacaga
ggagcaggagcaagggatagtcaggaaggggagaaaaaagctgagaaagatgtcaaaaat
acacaggagaaaggggaggagtga
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