Trichomycterus rosablanca: 134330063
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Entry
134330063 CDS
T09921
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
trn
Trichomycterus rosablanca
Pathway
trn03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
trn00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
134330063 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trn03021
]
134330063 (pcf11)
03019 Messenger RNA biogenesis [BR:
trn03019
]
134330063 (pcf11)
Transcription machinery [BR:
trn03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
134330063 (pcf11)
Messenger RNA biogenesis [BR:
trn03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
134330063 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
CFIA_Pcf11
SHOCT
zf-DBF
Motif
Other DBs
NCBI-GeneID:
134330063
NCBI-ProteinID:
XP_062867063
LinkDB
All DBs
Position
16:complement(26931059..26947458)
Genome browser
AA seq
1459 aa
AA seq
DB search
MSAEAAAREDACREYQSSLEDLTFNSKPHINMLTILAEENLQFSKDIVAIIEAQIAKAPP
AEKLPVMYLVDSIVKNVGRQYLDVFTKNLVSSFICVFEKVDENTRKCLYKLRSTWDEIFP
LKKLYALDCRVNGVDPAWPIKPLPPSIHVNPKFLKQTEDLPPRPAAPEKSIAEEQVIRQQ
LLAKQKQLLELQQKKIELELEQTKAQLVASTTHPPVSAQGKFAPAPAVQPVPTPPAKSWL
PSQAEKPPTRDPRLNRSPAMSVNTKEHGNYKKESQGAPIVATDKKGPPPAERPAKLMRIP
KKDSSSTEEKNKPKSVSPLSRISLHKSKDVEPEHTVPSDITKKDPRLRKQVPEKTDTKEE
EVKEKKKSFEKKEREEFSKSSDQQKSSSFRSKSLNGSLSKHDRFGSFQKPDIKISKANIR
KRSRSRSRSPPVHSPKRKDRRSPKRRTRSITPPSKPGKGRQLSKHSEDLAPASGIKEERN
APKKSISELRRLKRPLEERTSEHRDAPPPRASPVDQRSTKDVKKWKSGWEPTKQPEPDLS
HSKPGPQRHKTWSNYQRPPTPRTPKQHRLSVDANLQIPDELNSASKRDLLRKASQRLSNG
EISQDEFLSFAHKIRQLFQYQDEKQHSDSWEESNDGTYIRKKPHGQMSDAELSYHNHKSQ
LIRTQLQRPVHHISPLRENMQHHRPQQDQDHFGETSDGHRRGTDVHKLFPMPDDPRRLDK
ATSRMGPPFRNSSSPVNCDRNSPHMDVDQPDEGDISPRFESPNSVHSGTGPDHDEPASLD
TVQHEIISGPGRGKRDLTDSPGHTPPHSSEEPGIQMSMQKHDRTNMAPQFDGNMRSHGPH
EGPHEGPQDHIGQPRIDGLSVPPQGRFESPVGHGHPRYDEPGWFDGRGPQRFERSPLLKN
PVRFENQPMPHGPLRYSEPRGGGRFDGPASGHFDGPVGHQGPQRFDCPGPMRFNNPASQN
RFDSPARFDDPHMAPVLNNPAGFEGPMLYPTGMANYDGPMRLEGPGGQGQGMIRFDNPAQ
PGPMRFEAQPPGIPRFDSPRYCGPQNIQNSFRPQGQMLIDHPQGQGAMINQGVPPSGFNM
NPSNAFDNQPQQFHMQQNVPQAPNFNMSDPAGFQNSYRPVQFPGAPAANPAPPMGVMNAP
VQNFIPSNPGTFNPPSTQFIQPESHLGQMDVNDLMAKLIGSGIIKPTQSDSGYESTVGTQ
SQSQPEDEPDEEEEQAEDENLPDMTSFLYDMKQRHESVIVKLYTGIQCYSCGMRFTASQT
DIYADHLDWHYRQNRSEKDISRKVTHRRWYYSLTDWIEFEEIADLEERAKSHFFEKVHEE
VVQKTQEAAKEKEFQSVKAAPDVVKEFCEICQEQFEQYWEDNEEEWHLKNAIRVDGNTYH
PSCYEDYKNTSSFVDATPSPNKMLTENPLNAFIKQEREGEDSCSSIKEEPAEEATGAVTV
KQEVQDDTEGELKPSAIPF
NT seq
4380 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgaggcggcggctcgcgaggacgcgtgtcgggagtatcagtcctctctggaa
gatctcacctttaacagtaaaccgcacatcaacatgctgaccatcctcgccgaggagaac
ctgcagttcagcaaggatatcgtcgctattattgaagcgcaaatcgccaaggcgcctcca
gctgagaagcttcctgttatgtacttagtggattccatagtgaagaatgttggaagacag
taccttgacgtgtttactaaaaaccttgtctcttcctttatatgtgtgtttgaaaaggtg
gatgaaaacactagaaaatgtctctacaaattgcgttccacctgggacgaaatttttcct
ttaaaaaagctgtacgcattggattgtcgtgtaaacggcgttgatcctgcttggcccatc
aagcctttacccccaagcatccatgtcaaccctaaattcttaaagcagactgaggatttg
cctcctcgtcctgcagcacctgagaagagtatagcagaggaacaggttataaggcagcag
ttgcttgctaagcaaaagcagttgctagagcttcagcaaaagaaaatagaacttgaactc
gaacaaacaaaagctcagctggttgccagcaccacccaccctccagtcagtgctcagggc
aagtttgctccagcacctgctgtccagcctgtgcccacaccaccagccaagtcatggctt
ccatcacaggcagagaagccaccaaccagagatcctagattaaaccgatctcctgccatg
tctgtgaatacaaaagaacatggaaactacaagaaggagagccaaggcgcgcctatcgtt
gcaaccgataagaaaggacctccacctgcagaaagaccagctaagctcatgagaatacca
aaaaaagacagctcttcaactgaggaaaaaaataaacccaaatcagtgtcacctttaagc
agaatcagtcttcataaaagtaaggatgttgaacctgaacacacagtgccctcagatatt
actaaaaaagacccaaggttgcggaaacaggtgccagagaagactgacacgaaagaggaa
gaggtcaaagaaaagaaaaagtcattcgaaaagaaagagagggaagagttcagcaaaagc
tccgatcagcagaaatccagctccttcagaagcaaatcactaaatggatctttaagcaaa
cacgacaggtttgggagctttcaaaaaccagacattaaaatcagtaaagccaatataaga
aaacgatctcggtcaaggtcccgctccccacctgtgcactctcccaagcggaaagataga
cgatcaccaaagcgcagaacaagaagcatcactccgccttctaaaccgggaaaggggagg
cagttaagcaaacacagtgaggacctcgcaccagcgtccggtataaaagaggagcgaaac
gcacctaaaaagagcatttctgaactaaggcggttaaaaagacctctggaagagaggacg
tccgagcacagagatgcacctccaccgagagcatcaccagtagatcagagaagcacaaaa
gatgtcaagaaatggaagagtggatgggaacctactaaacaacctgagccggatttgtca
cacagcaaaccaggaccacagcggcataaaacatggagcaattatcagagaccgccgacg
ccacgcacgccgaaacagcaccggctaagtgtcgatgccaacctgcagattccagacgag
cttaattctgccagcaagagagatcttttacggaaggctagccaaagactgagtaatgga
gagatatcccaggatgaatttctctcgttcgctcataaaatcaggcaactatttcagtat
caggatgaaaaacagcattccgattcttgggaggaatcgaacgatggtacatatatcaga
aagaaacctcatggacaaatgtctgatgctgagctctcctaccataaccacaaatctcag
ctgataagaacacagctgcagcgtccagttcaccacatttcacctctgagggagaacatg
caacaccaccgacctcaacaagaccaggatcacttcggtgagacttcagatggacacagg
agaggcacagacgtccataaattattcccaatgcctgatgatcctagaagacttgataaa
gccacttctcgaatgggaccaccttttagaaattcctctagtccagttaactgtgaccga
aactctccacatatggacgtggatcaacctgacgaaggtgacatcagtcccaggtttgaa
agtccgaacagcgttcactccggtacaggtccagatcacgatgagccggcaagtttggac
actgtgcagcatgaaatcatttctggacctggccgaggtaaacgagacctcactgactct
cctgggcatacaccacctcactcttctgaagagcctggcattcagatgagcatgcaaaag
catgatcgaacaaacatggcaccacagtttgatggtaacatgagatctcatggtccacat
gaaggtccacatgaaggaccacaggaccacatagggcagccaagaatcgatggtctgtca
gtacctcctcaaggcagatttgagagtcctgttggacatggacaccctaggtatgacgaa
cctggttggtttgatggccgtggaccacaaaggtttgaaagatctccactattaaagaac
ccggttaggtttgaaaatcagcccatgccacatggcccactaaggtacagcgagcctcgt
ggtggcggaagatttgatgggccagcatcaggacattttgatggtccagtgggacatcaa
ggccctcagaggtttgactgcccaggaccaatgcgcttcaataatccagcatctcaaaat
agatttgacagccccgcaaggttcgatgatccccacatggcaccagtcctaaataatcct
gcaggatttgaaggcccaatgctgtaccccactggtatggcaaactatgatggccccatg
agacttgaaggaccgggcggtcagggccagggcatgattcgttttgacaacccagcacaa
ccaggacccatgagattcgaagcacaacctcctggcataccaagatttgactctccgaga
tactgtggacctcagaacattcaaaactcattcagaccacaagggcagatgttgatcgat
cacccacagggtcaaggagcaatgataaaccaaggtgttccaccaagcggctttaacatg
aacccatctaacgcattcgataatcaaccgcaacagttccacatgcaacaaaacgtccca
caggcaccaaacttcaatatgtcggatcctgcagggtttcagaattcttacaggcctgtt
cagtttcctggggctcctgcagccaaccctgctccccctatgggtgttatgaatgctcca
gttcaaaattttattccatcgaaccctggaactttcaatccaccaagtacccagtttatt
cagcctgagagtcatctgggccagatggatgtgaatgacctgatggctaagctcataggc
agtgggatcattaaaccaacacaatcagactcaggctatgagtccacagtgggaacacag
tctcagagtcaaccagaagatgagccagatgaggaggaagaacaagccgaagacgaaaac
cttcctgatatgaccagcttcttatatgacatgaaacagagacatgaaagtgtcatcgtt
aaactgtacactggaatccagtgttactcgtgcgggatgcgcttcactgcctctcagact
gatatttatgccgatcacttggattggcactataggcaaaaccgctctgagaaagacatc
agcaggaaagtaacacacagacgctggtactacagtctgacggactggattgaatttgaa
gaaattgctgaccttgaggagagagcaaagagccacttctttgaaaaggttcacgaggaa
gtagttcagaaaactcaggaagcagccaaggagaaagagttccagagtgttaaagcagct
ccagatgttgtaaaggaattttgtgagatttgccaggagcagtttgagcagtattgggag
gacaacgaggaggagtggcacctgaaaaacgccatccgagtcgatggaaatacgtatcac
ccgtcgtgttatgaagactacaaaaatacctcttcctttgtggacgccacaccttcaccc
aataagatgctcacagagaaccctttaaatgcttttataaaacaagaaagagagggtgag
gactcgtgctccagtattaaagaagagccagctgaggaagccaccggtgctgtaacggta
aaacaggaggttcaggatgatacagaaggagaattgaaacctagtgcaatcccattttaa
DBGET
integrated database retrieval system
