Thermomicrobium roseum: trd_1713
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Entry
trd_1713 CDS
T00845
Name
(GenBank) RNA polymerase sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
tro
Thermomicrobium roseum
Pathway
tro02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tro00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
trd_1713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tro03021
]
trd_1713
Transcription machinery [BR:
tro03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
trd_1713
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r4_2
Phage_Mu_Gp27
Motif
Other DBs
NCBI-ProteinID:
ACM05747
UniProt:
B9L102
LinkDB
All DBs
Position
complement(1716317..1717846)
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AA seq
509 aa
AA seq
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MTKAERRGKPKRSREVVTRANGSVDLPVLAGADAILATARLHGRLTREQWLALIDTLGPD
AAETALAELQAEGVPVAIEEALEPDGTSRSWEPEKEADPDLLVEDPVRLYLAEIGRVPLL
TAEQEVELGRAVELAEYLDELRRCCGDDPLVLLLAAWERFVTGWPLVERLAQRLPGKRET
RTAVLAAILPLRSLPPVLLRQFRGKDGRSVEELEDTLRCRRLEFALFPEPLQRWCDPLER
RLPPIPPLNELGLDRTALIAHWQRLRRDGEAARRKLTEANLRLVVSIAKRYTGRGLTLLD
LIQEGNLGLMRAVDKFQTHKGFKFSTYATWWIRQAITRALADHARTIRLPVHLVETLNRV
SRVARQLTQELGREPTTSELAAAVNMPLDRLRELLQAAQDPVSLEAPVGQEEESTLGDFL
EDERAVAPLDAAALSLLREQVQSLLATLTERERRVLAMRFGLEDGQTYTLEEVGRAFGVT
RERVRQIEAKALRKLRHPQRARALRDFLE
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaaggcggaacggcgcgggaagcccaagcggtcacgtgaggtggtgaccagggcg
aacggatcggtcgatctcccggtgctcgcaggggctgatgcgatcctggcgacggctcgc
ctgcacggccgtctcacgcgtgagcaatggttggccctgatcgacacgctcggccccgat
gctgccgagacggctctcgctgagctgcaagcagagggagtccccgtcgcgatcgaggaa
gcgctcgaaccggatggcacttcccgctcctgggagcctgagaaggaggccgatccggat
ctgctcgtcgaggatccggtgcgcttgtacctcgcggagatcgggcgtgtcccgctcttg
acggccgagcaggaagtggagctcggccgagcagtggagttggcggagtatctcgacgaa
cttcggcgctgctgcggtgacgatccgctcgttttgctgctggcggcgtgggagcgcttc
gtgacgggttggccgctcgtcgagcgcctggcccagcgtcttccaggcaagagggagaca
cgcaccgcggtgctcgctgcgatcttgccgctgcgctcccttccgcccgtgctgctgcga
cagttccgtgggaaggatggcaggagcgtcgaggaactcgaggacaccttgcggtgccgg
cgcctggagttcgcgctctttcccgagcctttgcaacggtggtgtgatccgctcgagcgc
aggcttcccccgattccgccgctgaacgagctcggactggatcgaacagcgctgatcgcg
cactggcagcgcctccggcgcgacggggaggcggctcgtcgcaagctgaccgaggcaaat
ctccggctcgtcgtcagcatcgccaagcggtataccggccggggattgacgctcctggat
ctgatccaggaggggaatctcgggctgatgcgggcggtcgacaagttccagacgcacaag
ggcttcaagttctcgacctatgcgacctggtggatccgccaagcgatcacgcgtgccttg
gctgatcatgcccggacgatccgcttgccggtccacctcgtcgagaccttgaaccgcgtc
agccgtgtggcacgccaattgacgcaggaactcgggcgcgagccgacgaccagcgaactc
gcggccgctgtcaacatgccgctggatcgcctacgcgaattgctccaggcggcacaggat
ccggtttcgctggaagcgccggtgggccaggaagaggagagcacactgggtgactttctg
gaagacgagcgcgcggttgccccgttggatgcagcagcgctttcgctcttgcgcgagcag
gtgcagtcgctcctggcgacgttgactgagcgtgagcgccgagtcctcgccatgcgcttc
ggtctcgaagatgggcagacctacacgttggaagaagtcggtcgagcgttcggtgtcacg
cgcgagcgagtccgccagatcgaggcgaaggcgcttcgcaaactccgtcatccgcagcgg
gcgcgagcactccgcgatttcctcgagtaa
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