Triplophysa rosa: 130555021
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Entry
130555021 CDS
T09216
Symbol
lig1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
tros
Triplophysa rosa
Pathway
tros03030
DNA replication
tros03410
Base excision repair
tros03420
Nucleotide excision repair
tros03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130555021 (lig1)
03410 Base excision repair
130555021 (lig1)
03420 Nucleotide excision repair
130555021 (lig1)
03430 Mismatch repair
130555021 (lig1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tros03032
]
130555021 (lig1)
03400 DNA repair and recombination proteins [BR:
tros03400
]
130555021 (lig1)
Enzymes [BR:
tros01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
130555021 (lig1)
6.5.1.6 DNA ligase (ATP or NAD+)
130555021 (lig1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
130555021 (lig1)
DNA replication proteins [BR:
tros03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
130555021 (lig1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
130555021 (lig1)
DNA repair and recombination proteins [BR:
tros03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
130555021 (lig1)
NER (nucleotide excision repair)
Other NER factors
130555021 (lig1)
MMR (mismatch excision repair)
Other MMR factors
130555021 (lig1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID:
130555021
NCBI-ProteinID:
XP_057191005
LinkDB
All DBs
Position
LG5:complement(21216771..21231515)
Genome browser
AA seq
981 aa
AA seq
DB search
MQRSISSFFQPKKGKEKNDEQVNVKLEPVKSPLKIQNGFQESDSPVKKVNKRSRPIIDSD
DEDQPVVKEQVNKQSEAQVVKHETAASTPTSPKSPITPLTPVTSSNSVGMVTPASSGTPG
TPATPTSTSPSGIPKRQTARKQFPKRKLESRSDGEGTKEEKGVDEKQESKRARVEDSPGQ
TENEKEMMEVEVEEKSGDEKLVVEERKEENEAKAIVALHVNEKMKEKKGESSDGPEKKLN
GVSKKKEQEVAKEKVKSSPERVVKKDTEEKEGSAKKKTISSFFAPRKAAVKLEKEEQNEG
ERKKTGETSAVSEQKDKKSEKEVDSVAQNQYDPSRTNYHPIDHACWNRGEKVPYLAVART
FEKIEEDSGRLKNIETLSNLLRSVILLSPDDLQCCVYLCLNQLGPAYEGLELGVGETVLM
KAVAQATGRQLDKIKAEAQDKGDLGLVAESSRSNQRMMFAPANLTARGVFSKLKEIANMS
GNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGLAEQSVLAALSQAVCLTPPGQE
FPPAVLDAGKGMSTDSRRVWLEGKALILKQTYCEMPNYDAIIPVLLKEGIDELPNHCKLT
PGVPLRPMLAHPTKGVGEVMKRFDEASFTCEYKYDGERAQIHILENGEVHVFSRNQEDNT
SKYPDIIERIPQVKKASVRSCVLDSEAVAWDREKKQIQPFQVLTTRKRKDVDASEIKVQV
CVYAFDLLYLNGESLVREPLSKRRALLQESFEEREGEFVFAKSLDSDNTESIGEFLEQSV
RDSCEGLMVKTLDKHATYEIAKRSHNWLKLKKDYLEGVGDTVDLCVIGAYLGKGKRAGSY
GGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHYNFLKEHILPKPRPYYRVDQSAEPDVW
LEAVQVWEVKCADLSLSPVYKAAMGLVDPEKGISLRFPRFLRIRDDKKPEDATTGAQIAD
LYRKQQQIQNQGDKTELEDYY
NT seq
2946 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatatcgtcattctttcagccaaagaaaggcaaggagaagaatgatgaa
caggtcaatgtaaagcttgaacctgtgaaaagccctctcaaaattcagaatggttttcag
gaaagtgattcgccagtaaagaaggttaacaagcgtagccgaccaatcatagacagcgat
gatgaagatcaacctgtggtaaaagagcaagtgaacaagcagagtgaagcccaagtggta
aagcatgagacagctgcgtccactccaacatctccaaaatcccccataactccgttgaca
cctgtcacttcgagtaactctgttggcatggtaacccctgcttcctcgggcactcctgga
acaccagccactccgacatcaacatcaccatcgggcattcccaaacgacagactgcccgg
aagcagttccctaagagaaagctggaaagcaggagcgatggagagggaacaaaagaggag
aaaggagtagatgaaaagcaggagagtaaaagagctcgagtagaggactcaccaggtcag
acagagaatgagaaagagatgatggaggtggaggtggaggagaaaagtggagacgaaaag
cttgtggtggaggaacggaaagaggagaatgaagcaaaagcaattgtagccttgcatgtc
aatgagaagatgaaagagaagaagggtgaaagcagtgatgggccagagaaaaagttaaat
ggagtgagtaagaaaaaagaacaggaggttgcgaaagagaaggtcaagagcagccctgaa
agagtggtgaagaaagacacagaagaaaaggagggatcagctaagaaaaaaaccatcagc
agtttttttgctcccagaaaagcagctgttaaactggagaaagaggaacagaacgaggga
gagagaaagaagactggagagacctctgccgtctctgaacagaaagacaagaaaagtgaa
aaggaagtggactctgttgctcagaaccagtatgatccctcgagaacaaattaccatccc
attgaccacgcctgctggaataggggtgaaaaagtgccgtatttggctgttgctcgcacc
tttgagaagattgaagaagattcaggcagactgaagaatatcgaaacactttctaacctt
ctgcgctctgtaatcctgctctcaccagatgacctgcagtgctgtgtttacctgtgtctg
aaccagctcggaccagcatatgagggtctggagctgggcgtcggggaaaccgtcctgatg
aaagctgtcgctcaagccacagggcgacagctggacaaaatcaaagcggaagctcaagat
aagggagacttgggattggtcgctgagagttcccgcagcaaccaaaggatgatgtttgct
ccggccaatctgacggcccgtggcgtattcagtaaactgaaggagattgccaacatgagc
ggcaactctgcaatgaataagaagatcgacattattaaaggcctttttgtggcctgtcgt
ttttctgaggcccgctacattgtgaggtcattggcagggaagctgagaatcggattggct
gagcagagcgttctcgcagctctcagtcaggccgtgtgcctgacgcccccaggccaagag
tttccaccagctgtgttggatgctggaaaaggaatgagtacagacagcaggagagtttgg
ttggaagggaaggcactgatcctgaaacagacatactgtgagatgcccaattatgacgcc
atcattcctgtcttgctgaaagaaggcatagatgaactgcccaatcattgcaagctcacc
ccaggtgtgcccttacggcccatgttggctcacccaactaaaggtgttggcgaggtaatg
aaacgattcgacgaggcttctttcacctgcgaatacaaatatgatggagagagagcccag
atccatattcttgagaatggagaggtgcacgtttttagccgaaaccaagaggataacacg
agcaaatacccagatattatcgaacgaataccacaggtgaagaaagccagtgtgcgctcc
tgtgttctagattcagaagcggtggcctgggacagagaaaagaaacagattcagccattt
caggttctcaccacacgcaagagaaaggatgtggatgcctctgagatcaaggttcaagtg
tgcgtgtatgcctttgacctgctctacctgaacggagaatctctggtgcgagagcctttg
agcaaacgccgggctctgttacaagagagtttcgaggagagggaaggagagttcgtcttc
gcgaaatccctcgattctgacaatacagaaagtatcggcgagttcttggagcagtctgta
cgagattcctgtgagggtttaatggtgaaaacattggacaaacacgcaacgtatgagatt
gccaaacgctctcacaactggctgaagctaaagaaggattatctggagggtgtcggggac
actgtcgatctgtgtgtgattggtgcttatctggggaaaggaaagagagcaggcagctat
ggaggatttttactggcctgttacgatgaggagaacgaagagttccagtctgtctgcaag
atcggaacaggctttaaagatgaagatctggaacaacattacaatttcttgaaggagcac
attttacctaaaccacggccatattaccgcgtggaccaatcggcagaaccggacgtttgg
ctggaggcggtgcaagtgtgggaggtgaaatgcgctgacctttcactgtcacccgtctac
aaagcagcgatgggattggtggacccagagaaagggatttcactccgtttcccaagattc
ctcaggatcagagatgacaaaaagccagaagatgctaccacgggggcacagattgctgat
ctctacagaaaacaacagcagattcaaaaccagggtgacaaaactgaacttgaggactac
tattaa
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