Triplophysa rosa: 130557361
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Entry
130557361 CDS
T09216
Symbol
chd6
Name
(RefSeq) LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding protein 6
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tros03036
]
130557361 (chd6)
Chromosome and associated proteins [BR:
tros03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
130557361 (chd6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Chromo
BRK
ResIII
HDA2-3
DEAD
CHDCT2
MUN
Motif
Other DBs
NCBI-GeneID:
130557361
NCBI-ProteinID:
XP_057195041
LinkDB
All DBs
Position
LG7:complement(4361840..4398039)
Genome browser
AA seq
2972 aa
AA seq
DB search
MSGAGVSSSNSCIGRLTPVSSQRMGRRHKVQEKMKIQKKDKQMSATHVLKHTPSAAASHA
SDQNAQTTFPIGHFGKEQLRIIGGPPNHCMAQPKHSGLRQVGPAAADQSLRLTPSPINSE
EDDGGGGARVKKKRRKKDKKVLEWPQDGHGDVKPKRKEQKEGKERLPRKSKAAKEQKDHK
KREVKVQKEVRKGKKGQDAKVKEQAKNAATHPPSKRGRKPKEQGAMPPEKKKKGKRKSDA
LLEAVESDDTASLSTLATGGEESIDPMDTKRRSGRQVKRRKYNEDLDFKVVDDDGETIAV
LGTGRIPALSSTLAWQAEEPPEDEANIIEKILAVRTVKKEMSPDEEPESLEKFYVKYRNF
SYLHCKWATLEELEKDPRIHQKIKRYRNKQAQMKHIFTEPDEDIFNPDYIEVDRVLEIAI
TTDTETGEEVTHYLVKWCSLPYEESTWELQEDVDPVKIKEFEDLKEIPEIKHVERPLPEQ
WQKLERSRDYINGKELREYQLEGMNWLLFNWYNRKNCILADEMGLGKTIQSITFLYEIFF
MGLRGPFLIIAPLSTITNWEREFRTWTMMNVIVYHGSQISRQMIHQYEMYHRDDQGNVVT
GQFKFHGIITTFEMIMADCPELKKINWRCVVIDEAHRLKNRNCKLLEGLKLMNLEHKVLL
TGTPLQNSVEELFSLLNFLEPLQFPSETTFLEEFGDLKTEEQVKKLQAILKPMMLRRLKD
DVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFTFLAKGANQHNMPNLINTMMELRKCC
NHPYLITGAEEKILESFRKTYSPDALDFQLQAMIQAAGKLVLIDKLLPKLLAGGHKVLVF
SQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFSKVDSDRFVFLLCTRAGGLG
INLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASLKL
GLDKAVLQDINRKGSLNGVQQLSKMEVEDLLRKGAYGALMDEEDEGSKFCEEDIDQILQR
RTQTIKIQSEGKGSTFAKASFVSSGNRTDISLDDPNFWQKWAKIAELEIDSKAEKESLVI
DTPRVRKQTRHYNSFEDDELMEFSELDSDSEERPCRSRRLSDRSRRYLRAECFRVEKNLL
IFGWGRWNEILNHGRFKWHLTERDMEILCRALLVYCVRHYKGDDKIKSFIWDLITPTKDG
HNQALQNHSGLSAPVPRGRKGKKLKNQLSPPELKNADWLVHCNPEVVLQDDSYKKHLKQH
CNKVLLRVRMLYYLKVEVLGDAAAQALEGIPASKLEVTLPDIDYIEIPTIWWDAEADKSL
LIGVHKHGYERYNAMRADPALCFLERVGMPDVTALTVEQGEAEAVADTPDSISKNDEVKE
ETESKSEELEEKGDIKEEPMLEEIGKNDSTVMASLQGDLIAEVIEQGRIHWPAGSSLTAR
LRRLITAYQRYTRREPLRPDFLLHEGIAPVAWHIGDFRHCTTEPDPLFLEWQRRWTRREQ
ADFYRTVSSFGVAFDPEKKTFDWNQFRALARLERKTDESLERYFYSFVSMCRTACRLPPR
KDECSVDPTLFVEPITEERAARTLYRIELLRKVREQVLRHPLLGARLQLCRPSLYLPVWW
ECGKHDRDLLIGVAKHGLSRTDFYILNDPQLSFLEAHRNYVHKENHRYPAPGLSHLHCCL
YDANHGHCQSPQPPEYRAATSHHTQTHQLIHTPGHHQPTEVVASETGSISMGTGSREVFL
DCPPLDDSLELGSLQHDSLTSDQLHSKSGKEAFNGFPFNSATGGQNMLNSYGVQGELNGT
QGDIADTIAGKLRSDVLVGEQGSSEETGLMAPSVELDELQTPWESSDHAETSDMFNETDP
ILGAPALETGFLDAAQPEDGREGDEALTDCLSMPSSDSQSNPVEPLAPSFMLFKDLNVGE
TSVDQTDLSASLPEYVPPTPLGLPEVSLDQADPLSEEQEEKLSDSNITQSIPSPGDGAES
IGFHFEKEELSLDSDSLATAVPRMKDADEIDKMPSLESSRENCLEESQKMDCKVSFEDSC
EAPLDESYEKAITEPGKVPLQESYDLTCDETLQEPCEGYQQDSTEGQMLEEPCKEPSTEE
XNLTNTTLSTDYPLTSSLPSSPAILPDTSVSPDLEADPNIRQEFLMDPVVSDVKPEPDST
TQTPQLEQTEVLEVKDKLKDEDTKTSALLDVEAPRFSLPMCEMENSVHEIREPTIAQLLQ
EKALFSFSEWPKDRVIINRIDSVCHTILKGKWPSSSQQYESPSSLANTCMPSSTHQRAGF
LPTRMTQSLNFNLPHTVQHLPKERLVAPVFLSELKRPRHGFEFEAEVLAKPSNLGEKIQA
GSHRANALLLNGWQDAAIDLSKQTELTVGGESGPIGHMSHTVQSAPHKITGIGSIQGSLG
LDMAGILQAGLIHPVTGQIVNGSLRRDDAMFRRRRGRRRNVEATDLNFLKSRVVNLPEQQ
SGSENISHPVVSSTSSQSECPSASPATIPGPPSAPPPTAPPAEALNVTVEREAANKGLME
WLRQNPSYNMELPTFPSSQSASMLHSFLDRPKQRRHRCKDPTKLDINSLTGEERVPVVHR
STGRRLGGAMAPAIKELSRWLDANSEYCVAPDWADVVKHSGFLPEGKFTRILSGPVCREP
GPRRRGRRPRCEMPKAPELPAGMAPLFMNGGLIGSMDLVSLPNLHNVPGIPLTGIMGFPH
GFATAVASGDDGKNGLGMLPMMLHGMTAVQPPMYSAHMSGMMTQPLSTATSTVSTATASS
AAASGTSTNSTTVTSTSSSADSSDATPQPDKAGSPMTTEKGNKEETKQGGEERKITPATV
STGAATSSSSSSITSSGSHLTFNPFLIPGMSHSLLYPHMFLPPGSIMALPAMPAADSTGS
PKRKRKRVVEVSGNVVVQVDGLEVKGLKEEQTTERKHQECEMEYDRPDVDLAQVNDPSDP
KNDPSEEKSTKKEMAEKGEIAGEACGSRDGED
NT seq
8919 nt
NT seq
+upstream
nt +downstream
nt
atgtccggagccggtgtgtccagttcaaatagttgcataggtagactgacacctgtctcg
tctcagagaatgggacgcagacacaaagttcaagaaaaaatgaaaatacaaaagaaggac
aagcagatgtctgccacccacgtactaaagcacactccatccgctgccgcctcgcatgcc
tctgaccaaaacgcacaaactacatttcccatcggccactttggcaaagagcagttacga
atcatcggcgggccccccaatcactgcatggctcagccaaagcactctgggttacggcag
gtggggcccgcagccgccgaccagagtctccgcctgacgccctcgccaatcaacagcgag
gaggacgatggagggggcggggccagagtgaagaagaaacgtaggaaaaaagataagaaa
gtgctggagtggccgcaagatggacacggcgacgttaaaccaaagaggaaggagcaaaaa
gaagggaaggagcgtcttccgagaaagtcgaaggcggcgaaggagcaaaaggatcacaag
aagagggaggtgaaagttcaaaaggaggtcagaaagggcaagaaagggcaagatgcgaaa
gtgaaagagcaggccaagaacgctgcaacacatccaccctcaaaaagagggaggaagcca
aaagagcagggtgccatgccaccagagaagaagaagaagggcaagaggaaaagtgatgct
ctgctggaggcggtggagagcgacgacacggcttccctcagcacgctggccacgggaggc
gaggaaagcattgaccctatggacactaagaggcgttcagggcgtcaggtgaagcgtcgg
aagtataatgaagatcttgatttcaaggtcgtggatgatgatggggagaccattgctgtt
ttgggcacgggccgaattcctgccctgtcttctacccttgcctggcaggctgaggaaccc
cctgaagatgaagccaacatcattgaaaagatactcgcagtacgaacagtcaagaaagag
atgtctccagatgaagaaccagaaagcttggagaaattttatgtgaagtacagaaatttc
tcctatctgcactgtaaatgggcgaccttggaagagttggagaaggacccacgcattcac
caaaaaatcaagcgttataggaacaagcaggcacaaatgaagcacattttcacagagccg
gatgaagacatctttaatccggactacatcgaggttgatcgagttttagagatcgctatc
actacagacacagaaacaggagaggaagttacacactacctggtcaaatggtgctctctg
ccatatgaggagagcacttgggagctacaggaagatgttgatcccgtgaaaatcaaagag
tttgaagacctcaaggaaataccagaaatcaaacacgtggaaagacctctaccagaacaa
tggcagaaactggagagatctcgagactacataaatgggaaagagcttagagaatatcag
ttagagggaatgaactggctgctcttcaactggtacaacaggaaaaactgtatcctggct
gacgaaatgggcctggggaagaccatccagtccatcacgttcctgtacgagatcttcttc
atgggtttgagaggaccattcctcatcatcgcccctctctccaccatcaccaactgggag
agagagtttcgtacatggaccatgatgaacgtcattgtctatcacggcagtcagatcagc
cggcagatgatccatcagtatgagatgtaccatcgagacgatcagggaaatgtagtaacc
gggcagtttaagtttcatgggataatcactacattcgaaatgatcatggcggactgtcca
gagctgaagaagattaactggcgctgtgtggtgatcgacgaggctcatcgacttaaaaac
cgcaactgtaaactgctggagggtctcaagctcatgaacctggaacataaagttcttctc
acaggaactcctttgcagaactcagttgaggaacttttcagtctcctcaacttcctcgaa
cccttacagttcccgtctgagaccactttcctggaggagtttggagacctgaaaactgag
gagcaggtaaagaaacttcaggccattctgaagcccatgatgttgaggagactaaaggat
gatgtcgagaagaatcttgcccccaaagaggagacaatcatcgaggtggagctcacgaac
attcagaagaaatactacagggccattctggagaaaaacttcacctttcttgccaaggga
gcaaaccagcacaacatgcccaacctcattaacacaatgatggagcttcgcaagtgttgt
aatcacccgtacctcatcacaggtgccgaggaaaagattctagagagcttcaggaagacg
tacagtcctgacgccttggatttccagcttcaggctatgatccaggctgccggtaaacta
gtgctcatagacaagctgctgcccaaacttctagctggaggacataaagtgctggtgttt
tcacagatggtcagatgtctggatatactggaagactacctcatccagaggaggtacacg
tacgagcgtatagatggcagggttcgagggaatctacggcaggctgccatcgatcgcttc
agtaaggtggactcggaccgtttcgtgttcctcctgtgcacacgagcgggagggctgggc
atcaacctcaccgcagctgacacctgcatcatattcgactcggactggaacccgcagaac
gacttgcaggctcaagctcgttgccaccggatcggtcaaagcaaagcagtgaaggtttat
cgccttatcacgcggaactcgtatgagagggaaatgttcgacaaagccagtctcaaactg
ggattggacaaggctgttctacaggacataaaccgcaagggaagtctcaacggggttcaa
caactgtctaagatggaggtggaagatctcctcaggaagggagcgtacggagcgctcatg
gatgaagaagacgagggctctaaattttgtgaggaggacatcgatcagatcctgcaaaga
cgcacccagaccattaaaatccagtctgagggaaagggatccacgtttgccaaggccagc
tttgtttcttcagggaaccgtacggacatctctctggacgatccaaacttctggcagaaa
tgggctaaaatcgctgagctggaaatcgactccaaagctgaaaaggagagtttggtgatc
gacacgcctcgcgtacggaagcagacgcgtcactataattcgttcgaggatgacgagctg
atggaattctctgaactcgacagcgactcggaagaacgcccctgtcgttcgagaaggctc
agtgaccgcagcagacgctacctccgtgcagagtgcttcagagtggagaagaacctgctc
attttcgggtggggtagatggaatgaaattctcaatcatggccgatttaaatggcatcta
acggagagagacatggagatcctgtgcagggctctgctggtctactgtgttcgacattat
aaaggagacgataaaatcaagagcttcatctgggacctgatcacgcccactaaagacgga
cacaaccaagcactccaaaaccactccggtctgtcagctcctgtcccacggggtcgtaaa
ggcaagaagctgaagaaccagttgagtccacctgagctgaagaatgcagactggctggtc
cactgtaaccctgaggtggttcttcaggacgacagctacaagaagcacctcaagcaacat
tgcaacaaagttttgctgagggtgcgaatgctgtactatctgaaggtggaagttctgggg
gatgctgcggctcaagctcttgaaggaatcccagctagtaaactggaggtcactctgcct
gatatcgactacattgagatccctactatatggtgggatgctgaggctgataaatcactg
ctcattggggtacacaaacatgggtacgagcggtataatgccatgcgtgcggaccctgcg
ctgtgtttcctggagcgggtgggcatgcctgacgtcacggcgttgacagtagaacaaggt
gaagcagaagcagttgcagatactcctgacagtatcagcaagaatgatgaagtgaaggag
gagacagaatctaagtctgaggagttagaagagaagggagacatcaaggaggagcccatg
ttagaggaaatcgggaaaaatgacagtacggtgatggcatcacttcaaggagatctcatt
gcagaagtgattgagcagggacggatacactggccggcaggctcgtctcttactgcgaga
ttacgacgactcattactgcctatcaacgatacacacggcgagagccgcttcgtcctgat
ttcctcctgcacgagggaattgcacctgtggcttggcatattggagattttaggcactgc
acaactgagccggatccgctttttctggagtggcaacggaggtggacacgccgcgagcag
gcggacttctatcgcaccgtgtcatcgtttggggtagcttttgaccctgaaaagaagact
tttgactggaaccagttccgtgcccttgctcgcttggagaggaaaacggatgaaagtttg
gagagatatttctacagcttcgtctcaatgtgtcgcactgcttgtagacttccacccaga
aaagatgaatgctctgttgaccctacgctctttgtggaacccattacagaggagcgagct
gcccgaacgttataccgtatcgaacttttgaggaaggtccgtgagcaagtattgcgccac
ccgcttttgggggcacgactgcagctttgtcgtcccagcctctatttgcctgtttggtgg
gagtgtggcaaacacgatcgtgatcttctcattggtgttgctaaacacggcttgagccga
acggacttctacatcttaaatgaccctcagctatccttcctggaggcccaccgaaactat
gttcacaaagaaaaccacagatatcctgcgccgggtttgtcccatctccattgctgctta
tacgatgccaaccatggccattgtcagtccccacaacctccggagtaccgcgccgcaacc
tcacaccacacacaaacccatcaactcattcatactcccggccatcaccagcccacagaa
gttgtggcgtcagagactggaagcatcagcatgggtacgggaagcagggaagtatttttg
gactgtcctccgttggatgattcgctagagttggggtctttacaacatgacagcttgaca
tcagatcagctacatagtaagtccggtaaagaggcctttaatggattccccttcaattct
gcaactggtgggcagaatatgctaaactcatacggtgttcaaggagaactaaatggcact
caaggagatatagcggacaccatagctgggaagcttcgtagcgacgttttggtcggagag
caagggtcctcggaggagaccggcttaatggctccttctgtggaactggatgaacttcag
actccatgggaaagctcggaccacgccgaaacctccgacatgttcaacgagaccgatccc
attctgggagcaccagcattagaaacaggatttctggatgctgctcagccagaagacggt
cgggaaggtgatgaagctctaaccgactgtttgagcatgcctagttcagactcccagagt
aaccccgtagagccgctagcaccaagcttcatgttgtttaaagaccttaatgtaggagag
acttctgtggatcagacggatctgtctgcaagtcttccagaatacgtaccgccgacacct
ctcggactcccggaggtaagtcttgaccaggccgaccccttaagtgaggagcaagaggag
aagcttagtgattccaacatcacacagagcattcccagtccaggagatggagcggaaagc
atagggttccattttgagaaagaagaactttccctggatagtgacagtctggctacagcc
gttccgaggatgaaggacgccgatgaaatcgacaagatgccttcattagagtcatcaaga
gaaaactgccttgaggaatcacaaaaaatggactgcaaggtttcatttgaggattcttgt
gaagcgcccttggatgaatcgtatgaaaaggcgataacagagccgggaaaagtgcctttg
caggagtcgtacgatttgacatgtgacgagaccctgcaggaaccttgtgaagggtatcag
caagactcgacagagggacaaatgcttgaagaaccctgtaaagaaccgtcaacagaggaa
tgaaatcttacaaacactactctctcaacagattacccattgacctcttcacttccgtca
tctccagctattttacctgacacctcggtatctcctgaccttgaggctgatcccaacatc
agacaagagttcctcatggatccagtggtgtcagatgtaaaacctgagccagacagcact
acacagacgcctcagcttgagcagactgaagttctggaggtgaaggataaactgaaggat
gaagatacaaagacatcagcattattagatgtcgaagccccacgtttttcattacccatg
tgtgagatggaaaacagcgtccatgaaataagagaaccaaccattgctcagcttctacag
gagaaagccctcttctccttttctgagtggccgaaggacagagttatcatcaaccgtatt
gacagtgtctgccacactatattaaagggaaagtggccttcctccagtcagcagtacgag
tctcccagctcactcgccaacacttgcatgcccagcagtacccatcagagggcaggattc
ctgcccaccagaatgactcagagcctaaactttaatcttcctcacactgtacaacattta
cccaaggagcggttggtggctcctgttttcctctccgaactgaaacgtcccagacacgga
ttcgaattcgaggcagaggttctcgccaaaccgagcaatcttggagaaaagatccaggct
ggatctcaccgtgctaacgctcttctccttaacggctggcaggatgcggccattgacctc
tccaagcagacagagctaacggttggtggagaaagtgggccgatcggtcacatgagccac
actgtccaatcagcacctcataaaataactgggataggctccatacaaggctcgctggga
ttggatatggcgggcattttgcaggctggcctaattcacccggttacagggcagatcgtc
aacggcagccttcgccgcgatgacgccatgtttaggaggaggagaggacggagaagaaac
gtggaggccactgacttgaacttcttgaagagccgagtcgtgaacttaccagaacaacag
agcggatcagagaatatcagccatcctgttgtgtcgtctacatcctcccagtcagaatgt
ccctcagcctctccggctacaattcctggccccccatcagcaccccctccaactgctcct
ccagcagaggccctgaacgtcaccgtggaaagggaagctgccaacaaaggcctaatggaa
tggctcagacagaatcccagctacaacatggagcttcccactttcccatcgtctcagagc
gcaagcatgttgcatagtttcttggatcgtccaaagcagagaaggcatcgctgcaaagac
cccaccaaacttgatatcaactccctaaccggagaggagagggtccctgtcgtgcacaga
agcacagggcgcaggcttgggggcgctatggctccagccattaaggagctttccagatgg
ctggatgcaaactctgagtattgcgtggcacctgattgggcggatgtggtaaagcactct
ggctttctccctgaaggcaaattcactcgcatcctctctgggcccgtgtgccgggaacca
ggtccacgaagaagaggcaggcgaccccgctgcgagatgcccaaagcccccgagctcccc
gctggaatggctccgctcttcatgaacggtggtctcattggaagcatggacctggttagc
ttacccaatctccacaatgtcccgggcatcccattaacggggatcatgggctttcctcac
ggttttgctaccgctgtagcgtcaggagacgatgggaagaatggactcggcatgctaccc
atgatgctccacggcatgactgccgtgcaaccgcccatgtatagcgcacacatgagtggg
atgatgactcagccgctgtccacggcaacctcaacggtttccacagcgaccgcatcatct
gccgctgcaagcgggacttctacgaactccaccaccgttacctcaacctccagctcagcg
gatagttcggacgccacgccgcagcctgacaaagcaggctctccgatgaccacggagaag
gggaataaggaagagaccaagcaaggaggggaagagaggaaaataacgcccgctacggtt
tctacaggtgcagccaccagcagttctagtagtagtatcacaagcagcggcagccatttg
acctttaaccccttcctaatcccgggaatgtcccatagcttgctgtatccgcacatgttc
ttgccacccggcagtatcatggcgctgcccgctatgcccgccgcagacagcacgggtagc
cccaagagaaagaggaagagagtggtggaagtaagtgggaatgttgtcgttcaagtcgat
ggcttggaagtcaaggggcttaaagaagaacagacaacagaacgaaagcatcaagagtgc
gagatggaatacgataggcctgatgtagatttagctcaggtcaatgatccttctgaccct
aaaaatgatccgtctgaggagaaaagtactaaaaaagagatggcggagaagggagagatc
gctggggaggcctgcggttcacgtgatggtgaagactag
DBGET
integrated database retrieval system
