Triplophysa rosa: 130570486
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Entry
130570486 CDS
T09216
Symbol
ddx46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
tros
Triplophysa rosa
Pathway
tros03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130570486 (ddx46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tros03041
]
130570486 (ddx46)
Enzymes [BR:
tros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130570486 (ddx46)
Spliceosome [BR:
tros03041
]
Complex A
U2 snRNP components
U2 related factors
130570486 (ddx46)
Complex B
130570486 (ddx46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
130570486
NCBI-ProteinID:
XP_057216795
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All DBs
Position
LG19:complement(2067561..2079901)
Genome browser
AA seq
1042 aa
AA seq
DB search
MGRESRHYRKRSGSRGRSGSRSKSRSPDSKRSKKDDRAGSRNRERSRRERSRSRDRRRSR
SRDRKRQRRSRSRDRRRSRSRDRRRSKSPGRGRSKEESENGEQSADKKKVKEEKEEEKVE
DQEFDQNTLEEEMRKRKERVEKWREEQRKKAMENIGEIKKELEEMKQGKKWSLEDDDDDD
EEPSAPVDQEGEEEEEEEEEEKAAEIDVSEQMEEETGEELDPLDAYMEEVKEEVKKFNMG
TMKGGNDKKGGMSVTKVMTVMKTKKMPHTIKKKGELMENDQDAMEYSSEEEEVDLQTALT
GFQTKQRKVLEPVDHQKIEYESFRKNFYVEVPEQAKMTPEEVNEYRLELEGITVKGKGCP
KPIKTWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDVIGIAKTGSGKTIAFLL
PMFRHILDQRPVGEAEGPITVIMTPTRELALQITKECKKFSKSLGLRVVCVYGGTGISEQ
IAELKRGAEIIVCTPGRMIDMLGANSGRVTNLRRVTYVVMDEADRMFDMGFEPQVMRIID
NIRPDRQTVMFSATFPRSMEALARRILSKPIEVQVGGRSVVCSDVEQHVIVIEEAKKFLK
LLEILGHYQEKGSVIIFVDKQEHADSVLKDLMKASYPCMSLHGGIDQYDRDSIINDFKNG
ACRLLVATSVAARGLDVKQLILVVNYCCPNHYEDYVHRAGRTGRAGNKGYAYTFITAEQA
RYACDIIKALELSGSPVPSELELLWTSFKEQQKAEGKTIKSSSGFSGKGFKFDETEHALA
NERKKLQKAALGLHDSDDEDTALDIDEQIESMFNSKKRVKDFSVPGGAAGAAGAGVTGAV
SAVSGPSSLATPSAGNIQKLEIAKKLALKIQAQKNLGAEAQDVMQQATNAILRGGTMIAP
SVSAKTIAEQQAEKINAKLNYTPVEKLEEERQAAEATETVKRYEEELEINDFPQTARWKV
TSKEALQRIGEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRLI
KEELIRLQNSYQPTSKGRYKVL
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgggaagagagtctcgacattacaggaagcgctccggttcaagggggaggtccggcagc
agatctaaaagccgatcgcctgactcaaagcggtctaagaaagatgatcgggctgggtca
cggaaccgtgagcgaagcagaagagagagatcacgcagccgagaccgccgcagatcacgc
tccagagacagaaaaaggcagaggcgctcgaggagtcgggacaggagacgctcgaggagt
cgagaccgcaggaggagcaagagcccgggcagaggaagaagcaaggaggagtctgagaat
ggagagcagtcagcagacaagaagaaagtaaaggaggaaaaagaagaggagaaggttgaa
gatcaagagtttgaccagaacactctggaggaggagatgagaaagagaaaagagcgtgtg
gagaagtggagagaggagcagaggaagaaagccatggagaacatcggagaaatcaaaaaa
gaactagaggaaatgaaacagggcaagaagtggagtctggaggatgatgatgatgatgac
gaggagccgtcagcccctgtggatcaggaaggcgaggaggaggaggaggaagaggaggaa
gagaaagccgctgagatagacgtgtccgaacaaatggaggaggagacaggagaggagctg
gaccctcttgatgcctatatggaggaggtgaaagaggaggtcaagaagttcaacatgggc
accatgaaaggaggaaatgacaagaaaggaggtatgtctgtgaccaaagtgatgaccgtt
atgaagacgaagaagatgcctcacactatcaagaagaaaggagagcttatggagaatgat
caggatgccatggagtattcatcagaagaagaagaggtggatctgcagacggccctcaca
ggctttcagaccaaacagaggaaagttttggagcctgttgatcatcagaagattgaatat
gaatccttccgcaagaacttctatgtggaagtgccagagcaggctaaaatgactcctgaa
gaggtgaatgaataccgcctggaactggagggcatcacagtgaagggcaaaggatgcccg
aagcccatcaaaacatgggtgcagtgtgggatatctatgaaggttttaaatgcactgaag
aaacacaattatgaaaagccaaccccaatccaagcccaggccatacctgccatcatgtca
ggtcgtgacgtcatcggcattgctaagacgggaagtggaaaaaccatcgcctttctcctt
cctatgtttcgtcacatattagaccagaggccagtgggagaggctgaaggtcccatcact
gtgataatgacccccacacgagaactggctctgcagatcactaaagagtgcaagaagttc
tccaagtctctggggttgagggtggtctgtgtgtatgggggcactggcatcagcgagcag
attgccgagttgaagcgaggtgcagagatcattgtgtgcacgccaggaagaatgattgac
atgttgggtgccaacagcggtcgagtcactaatctgcgtagagtgacgtatgtggtgatg
gatgaagcagaccgcatgtttgatatgggctttgaaccacaggtgatgcgtatcatagat
aacattaggcctgaccgtcagaccgtgatgttctccgccaccttcccacgatccatggaa
gccttggcccggaggatcctgtccaaacccatcgaggtgcaggtggggggcaggagtgtg
gtgtgttcagatgtggaacagcatgtgattgtaatagaggaggcaaaaaagttcctgaag
ctgttggagattctgggtcactatcaggagaagggctctgtcattatctttgtggacaaa
caggaacatgccgatagcgtcctcaaagacctgatgaaagcatcttacccctgcatgtca
ctacatggaggcatcgatcagtacgacagggacagcatcatcaatgactttaagaacgga
gcgtgccgactgctggtggccacctcagtggccgcacgagggctggatgtgaaacagctc
attctggtggtcaattactgctgcccgaaccactacgaggactacgtccaccgcgccggg
cgcacgggccgagcaggcaacaaaggatatgcgtacacattcatcactgcagaacaggca
cggtacgcctgtgacatcatcaaagccctggagctgtccggatcgccggtaccttcagag
ctcgagctgctgtggaccagctttaaagaacaacagaaagctgaggggaagaccatcaag
agcagcagtggattctccgggaaaggatttaagtttgacgagactgaacatgcgctggcc
aacgagaggaaaaagctgcagaaggctgcgttaggcctgcatgactctgatgatgaagac
acggctctggacattgatgagcagatcgagagcatgtttaactcgaagaagcgtgtgaag
gatttctctgttccgggaggggctgcgggtgccgctggtgctggggtcaccggagctgtg
tccgctgtgtcaggcccgagtagtttggccaccccatctgctggaaacatccagaaactg
gagatcgccaagaaactcgctctcaaaattcaagcacagaagaatctcggtgcagaggca
caggatgtgatgcagcaggcgacaaatgccatcctgagaggcggtacgatgatcgcgccc
tccgtctcagccaagaccatcgcagagcagcaggccgagaagatcaacgctaaactcaac
tacacacctgtggagaaactggaggaggagaggcaagcggccgaggccactgagaccgtg
aagagatacgaggaggagttagaaatcaacgatttcccccagacggctagatggaaagtc
acatctaaagaggcccttcagcgcatcggcgagtactctgaggcggccatcactatacga
ggaacgtacttcccaccaggcaaagaacccaaagagggagaacgcaagatctacctggct
attgagagtgcaaatgagctggctgtccagaaggcaaaagcagaaatcacacgcctcatc
aaagaggaactcatccgcttacaaaactcctaccagccaaccagcaagggacgatacaag
gttttgtaa
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integrated database retrieval system
