Thermotoga sp. RQ2: TRQ2_1342
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Entry
TRQ2_1342 CDS
T00706
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
trq
Thermotoga sp. RQ2
Pathway
trq03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
trq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TRQ2_1342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
trq03400
]
TRQ2_1342
Enzymes [BR:
trq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TRQ2_1342
DNA repair and recombination proteins [BR:
trq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TRQ2_1342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
AAA_22
SecA_DEAD
AAA_30
DctP
ERCC3_RAD25_C
IstB_IS21
AAA_16
AAA_25
UB2H
AAA_5
RecG_dom3_C
Chordopox_RPO7
AAA_19
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
ACB09686
UniProt:
A0A0F6AM65
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All DBs
Position
1372388..1375069
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AA seq
893 aa
AA seq
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MVEILLLPNERFSNIEGYIFYPSRDVLPLEDVVLSPEIKGKRIEILWRLLNGENIKIATT
LKALTEKVFSPDFLRENSLMITRSTKLTLSPERLVEMGYERVFTVQNVGEFAIRGDIIDI
YSPGNDFPVRIELFGDEIEEIRFFKVDTQRSFQSADKTLILPFVDLYGESTLLDFVKTDV
RFICEDLQKVLDEYRKFRKEMRDLLKERYNDFFDERVVEVVLKNVEKASVSLSTRIEKKE
SLPILDVDEIEEGGLVVHREHGIAIFEGVVRLKGVLGERDYLKLKYEDAVLYVPIEKIDR
VHKYIGDPSQVKLDRMNRGKWKQTLKKVREDIEKKIRELVELYMKRQEAQGLSLPGDPEL
EEKFAESFPYIETPDQQQSIEEVMSDLASEKPMDRLLCGDAGVGKTEVALRAAFRAVVSG
KQVAVLVPTTVLARQHYENFKERMETFGVKVELLDSSRTAREKKEIIEKLKKGEIDIIIG
THSLLNERIEFSDLGLVIIDEEQKFGVEQKERFKKLRLSVNVLTLSATPIPRTLHMALSG
MKDFSVINSPPPGRKPVYVYVAEYSDDLVKGAVIREINRGGQVIYVHNRVEELPEVFEKL
KRMFPELEIAVAHGKMSRRAMERIVHEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDAH
RYGLSQLYQLRGRVGRSDRRAFAYFLYPKGTPRSALERLKVLKSYTGFGSGLQIALKDME
LRGVGDVLGLEQHGNVVSVGLKLYNEILKETITRFKERRIEKKHSVNVEIENPPGRFFIP
EDYVQNPVERLRLYRRLASSLDEEDLEEILEEMRDRFGEPPEEVKLLVDYFRLRIRASKL
GVKKIRFDHSMVEIFPNRDSPFLNHPRYNRRSGSVVLYTRENPVEFLMDLLKK
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atggttgagattcttctgctgccgaacgaaagattttcgaatatagaaggatacattttc
tatccttcgagagatgttttgcctctcgaagatgttgttttgtcacccgagataaaagga
aaaagaatagaaatcctgtggaggcttctaaacggagagaacatcaagatagccactacc
ctgaaagcgctcaccgaaaaggtgttctcacccgattttctgagagaaaactccctgatg
ataacaagatccacaaagctcacattgtccccagaaagactcgtcgaaatgggatatgaa
cgtgttttcactgttcagaacgtgggagaatttgccattcgcggagatataatcgacatt
tactctccagggaacgactttcctgtgaggatagagctgttcggggacgaaatcgaagaa
atccgtttcttcaaggtagacacccagcgttcatttcagagtgctgacaagactctgata
cttccttttgttgatttatacggtgaaagcaccttgcttgatttcgtaaaaacggatgtt
cgcttcatctgcgaagatcttcaaaaggttctggatgaatacagaaagttcaggaaagaa
atgagggaccttttgaaggaacgctacaacgacttcttcgatgaaagagtagtcgaagtg
gtactcaaaaacgttgaaaaagcttccgtatcgttatcaacacgtattgagaagaaagaa
tcgctgcccattctggatgtcgatgagatcgaagagggtggactcgtagttcacagagaa
cacggaatagcgattttcgaaggggttgttcggctcaagggagttctcggagagagggat
tatttgaagttgaaatatgaagacgcagttttgtacgttcccatcgagaagatcgacaga
gttcataaatacataggtgatccttcgcaggtcaaactcgaccggatgaaccgcggaaaa
tggaaacaaacactgaagaaagtgagagaagacatcgagaaaaagatcagagaactcgtt
gaactttacatgaaaagacaggaggcccagggtctttctcttccaggtgacccagaactg
gaagaaaaattcgcggaatcttttccatacattgaaacccccgatcagcaacagagtata
gaggaagtgatgagtgatcttgcctctgaaaaaccaatggacagactcctgtgcggagat
gcgggtgttggaaaaacagaagtggctctgcgagctgcgttccgtgcagttgtatctggt
aaacaggtagcggtgcttgtaccaaccaccgttctggcaagacaacactacgagaacttc
aaagagagaatggaaacgttcggtgtaaaagtagaactcctggacagttcaagaacagcg
agagaaaagaaggagatcatcgaaaagctgaagaagggagaaatagacatcatcataggc
acgcattctttgctgaatgaaagaatcgaattctccgatcttggtcttgtcatcatcgac
gaagaacaaaagtttggagttgagcaaaaagaaaggttcaagaaactgagactctcggtg
aacgtgctaaccctgagtgctacacctattccacgcaccctccacatggccctctctgga
atgaaagatttttctgtgataaattctcctccccctggaagaaaaccagtatacgtttat
gtcgcagagtacagcgatgatctcgtcaagggagcggtgatcagggagataaacagggga
ggtcaggtgatctacgttcacaaccgcgtggaagaactaccggaagttttcgaaaaactg
aaaaggatgttcccagagctggaaatagcagtcgcccacggaaagatgtctagaagagct
atggagagaattgtccacgagttctaccgcgggaacatcgatgttcttctgtgtaccaca
attatcgagaatggtgttgatataccgaatgcaaacacactcatagtggatgacgcacac
agatacggcctttcacagctttatcagctcagaggaagggtgggtagaagcgaccgaagg
gcctttgcgtacttcctgtacccaaagggtactccaagaagcgctcttgaaagactgaag
gtgctaaaatcctacacaggctttggaagcggtcttcaaatagcgttgaaagatatggaa
ctgagaggtgtgggagatgtcctcggtttggaacagcatggaaatgttgtgtccgttggt
ttgaaactgtacaacgaaatcttgaaagagaccatcacgagattcaaagaaagacgaatc
gaaaagaaacactctgtgaacgttgaaatagaaaatcccccgggcagatttttcataccg
gaagattacgtgcagaatcctgtagagaggttgagactttacagaaggctcgcatcctct
cttgatgaggaagatcttgaggaaatactggaggaaatgagggatagattcggagaacca
cccgaagaagtgaagttactcgttgattacttcagattgaggatcagagcttcgaagctg
ggagtaaagaagatcagattcgatcactcaatggtggaaatctttccaaacagagactcg
ccgtttttgaatcatccgagatacaatagacggtcgggaagtgttgttctctacaccagg
gagaatccggtggagtttctcatggacttactgaaaaaatga
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