KEGG   Trichoderma reesei RUT C-30: M419DRAFT_101512
Entry
M419DRAFT_101512  CDS       T06031                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
trr  Trichoderma reesei RUT C-30
Pathway
trr03030  DNA replication
trr03410  Base excision repair
trr03420  Nucleotide excision repair
trr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:trr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    M419DRAFT_101512
   03410 Base excision repair
    M419DRAFT_101512
   03420 Nucleotide excision repair
    M419DRAFT_101512
   03430 Mismatch repair
    M419DRAFT_101512
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:trr03032]
    M419DRAFT_101512
   03400 DNA repair and recombination proteins [BR:trr03400]
    M419DRAFT_101512
Enzymes [BR:trr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     M419DRAFT_101512
    6.5.1.6  DNA ligase (ATP or NAD+)
     M419DRAFT_101512
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     M419DRAFT_101512
DNA replication proteins [BR:trr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    M419DRAFT_101512
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     M419DRAFT_101512
DNA repair and recombination proteins [BR:trr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     M419DRAFT_101512
   NER (nucleotide excision repair)
    Other NER factors
     M419DRAFT_101512
   MMR (mismatch excision repair)
    Other MMR factors
     M419DRAFT_101512
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase PNKP_ligase
Other DBs
NCBI-ProteinID: ETS00266
JGI: TrireRUTC30_1_101512
UniProt: A0A024S6Z4
LinkDB
Position
Unknown
AA seq 887 aa
MAPKQATLGYVKPTQQTIGKFFGAKAGAPVRQTTLSFATKTGSKATAKDKAEEDGSDGDA
STKENSDPEKDTKKRPRSPKKSQDAVSSQAGDKMDVDEDEAPVTKRARRTRVKVEDDEDD
TPQSSPKKEEAPSSPPAKKKRSPSPPKSSSRSRSSSPKPTQIKKEKKSAAVEDSDEVMKD
ESSSESASEAESESEEKEKVTAKARKAQQTMLQKHEKDPYPDWKPGTPVPYAALCKTFSL
IELTTKRLIIMEHCSRFLRQVMRLTPDDLLPTVLLMINKLAPDYAGIELGIGESLIMKAI
GETTGRSLQVIKADQKEIGDLGLVAVKSRSKQPTMFQPKALTVRGVHQGLMNIATVSGNG
AQGRKVDGIKKLLSASDAYLKEKVDITKDKGGPSEAKYIIRFLEGKLRLGLADRTVLVSL
AQAVVAHEAEQKGKIPSTTDLENGESILKTVYSELPSYDVIIPAMLKYGIFNLREHCKLR
PGVPLKPMLAKPTKAITEVLDRFEGQTFTCEYKYDGERAQIHYVAKDASEDLSAPAAGVA
KPAASGVSCIFSRNSEDLSKKYPDILEKLHTWVKEDTKSFVLDCETVAWDVTEKKVLPFQ
QLMTRKRKDVKAEDIKVKVCVFAFDLLYFNGEAVVEKSLRERRELLHTAFTPVEGEFAFA
THMNGQELDEIQSFLDESVKASCEGLMVKMLDGKESGYEPSKRSRNWLKIKKDYLSGVGD
SLDLVVIGAYYGKGKRTSVYGAFLLACYNASTDTYETVCNIGTGFSEQVLEDLYAQLSQI
TISRPKPFYSHSSGGQHQPDVWFEPKYVWEVKTADLTLSPRYKAGWKEGVDPAGEKGISL
RFPRFIKIRDDKKPDEATSSRQVAEMYRKQESVTKNKGPSVDDDFEY
NT seq 2664 nt   +upstreamnt  +downstreamnt
atggctccgaagcaggcgaccctggggtatgtgaagccaacgcagcagacgattggcaag
ttctttggggcaaaggctggcgcgccagtgaggcagaccacgctgtcttttgcgaccaag
acggggagcaaggcgactgccaaggacaaggctgaggaggatgggtctgacggcgatgcg
agcacaaaggagaactcagatccagagaaggacaccaaaaagcggccacggtcacccaag
aagagccaggatgcggtttcatcacaggccggcgacaagatggatgtggacgaagatgaa
gctcccgtgacaaaacgagccaggcgaactcgggtcaaggttgaggacgatgaggacgac
actccccaatcgtcgcccaagaaggaagaagccccaagcagcccccctgccaagaagaag
agatcgccgagccccccaaagtcgagctccaggtcaagatcatcgtcgccgaagccaacc
cagatcaagaaggagaagaaatctgctgcggtggaggactctgatgaggttatgaaggat
gagtcgtcctcagaatcggcatcagaggctgagagcgagtcggaagagaaggaaaaagtc
actgccaaggcgcgcaaggcccaacaaacaatgcttcagaaacacgaaaaggacccgtat
cccgactggaagcccggtacccccgtgccatatgcagccctctgcaagaccttttccctg
attgagctgacgacgaaacggttaatcattatggagcactgttcacgcttcctgcgtcaa
gtcatgcgcctcacgcccgacgacctcttgcccactgttcttctcatgatcaacaagctc
gcccctgactatgcaggcatagagctaggcattggcgaatctctcatcatgaaagccata
ggtgaaacaactggacgaagtcttcaggtcatcaaggctgatcagaaagagattggcgac
ttgggcctggttgctgtgaagagcagatcaaaacagccaaccatgttccagccgaaggcg
ctgaccgtgaggggcgtccaccaaggactgatgaacattgccacagtcagcggcaacggt
gctcagggtcgcaaggtcgatggtatcaagaagctcttgtctgcgtcagatgcgtatctg
aaggaaaaggtggatatcacaaaggataagggcgggccaagcgaggcaaagtacattatc
cggtttctggagggcaaacttcgacttggtttggcagacaggaccgttctggtctcacta
gcccaagccgttgtggcccacgaagcggagcagaagggaaagattcccagcaccacggat
ctggagaatggcgagtctatcctcaagacggtttacagtgagctgccgagctacgatgta
atcattccagcgatgctcaagtatggcatcttcaacctgagagagcactgcaagctacga
ccgggtgtgcccctaaagcccatgctggccaagcctaccaaagccatcacagaggtcctg
gaccgctttgaaggccagacgtttacttgcgagtacaagtacgacggcgaacgtgctcag
atccattacgtcgccaaggatgcttcggaagacttgagtgcgcccgctgcaggagtcgcc
aaaccggctgcctcgggagtttcatgcatcttctcccgcaactcggaagacctgtccaag
aaatatcccgatatccttgagaagctccacacatgggtcaaggaagacacgaagagcttt
gtgctcgactgtgagactgtcgcctgggatgtcacggagaagaaggtcttgcctttccag
cagctcatgactcgcaagaggaaagacgtcaaggccgaggacatcaaagtcaaggtctgc
gtctttgcctttgatttgttatatttcaatggcgaggccgtggtggagaagtctctccgc
gagcgaagggagctcctccacactgcgttcaccccagttgaaggtgaattcgcctttgcc
acacatatgaacggtcaggagctggacgagatccagtctttcctcgatgagagcgtcaag
gcatcttgcgagggtctcatggtgaagatgctggatgggaaggaaagtggatatgagccc
agcaagcgaagtcgaaactggctcaagattaaaaaggattacctgtctggtgtaggagac
tcgctagacctggttgtcatcggagcctactacggcaaaggcaagcggacatctgtctac
ggcgctttcctgctagcttgctacaacgcctcgacagacacttacgaaacggtctgcaac
attggcactggcttctcagaacaagtcctcgaggatctttacgctcagctctcccaaatc
acaatcagccgccccaaacccttctactcgcactcttcaggcggccagcaccagccggac
gtctggtttgagccaaagtacgtgtgggaggtgaagacggccgacttgacgctcagcccg
cggtacaaggctggctggaaggagggagtggacccagcgggcgaaaagggcatcagcttg
cggttcccgcgattcatcaagattcgagacgacaagaagccggatgaggcgacgagcagc
aggcaggttgcggagatgtacaggaagcaagagagtgtgacgaagaataaggggccgtcg
gtggatgacgactttgagtattga

DBGET integrated database retrieval system