Terriglobus roseus: Terro_2462
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Entry
Terro_2462 CDS
T02140
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module, ATP-dependent DNA ligase LigD phosphoesterase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
trs
Terriglobus roseus
Pathway
trs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
trs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Terro_2462
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
trs03400
]
Terro_2462
Enzymes [BR:
trs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Terro_2462
DNA repair and recombination proteins [BR:
trs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Terro_2462
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AFL88713
UniProt:
I3ZHJ5
LinkDB
All DBs
Position
2944685..2947534
Genome browser
AA seq
949 aa
AA seq
DB search
MAKAKKASTSAASSAGDAVDEQLARYRSMRDFKVTAEPSGGTKSKKPEALPFVIQKHAAT
RLHYDFRLGWNGVLKSWAVAKGPSYNVHDRRLAVQVEDHPMEYGGFEGIIPRGQYGGGTV
MVWDQGTWEPHVDVDEGLRKGSLKFGINGTKMHGNWTLVRMGGKAAQEGKPNWLLIKEHD
DFERGPDDPCITEEMPNSAVTGRTLEEIATASTHVWNSKETAGEGPAWYRDRARDADAAS
TSDKAASKPAAKPSAKTTSKASPKQAKSPPVVPAQIEKLPQEKLPDFLKPQLAGETTAPP
AGDEWVHELKLDGYRVQARKHGNNVELYTRSGLDWTHRMKPIAEAVKQLAVEDAILDGEV
CVLDDKGLSSFARLQASFEKNEKHPLTFFVFDLLHLNGHNTRALPLRERKALLHSLVTED
GDVRMSEDMIGDGTRIFHAACELHAEGIISKRADGAYTPGRSAQWVKSKCVHEQEFVVGG
WVDLSNGTRGIGSLLLGYYDDAGKLIYAGRTGTGFTQKIHKMLRDKLDALEQKTMPFTAI
SAEGRRGAHWVKPELVVQVRFSTWTGDQQVRQASYQGLREDKPADEVRREIGPPSAKYKP
VAASTKADPEPSASTEVVHKAKANKVVSINAKKDAKPTSAQKNAAAATTPMPAIRLTHPD
KIVDPESGITKQQLAEFLWAVAPQMLPHIADRPLSLVRCPEGSSNQCFYQKHVNHMLPKG
VGSVMVADKKGGAPEPYITLNDAEALAGLAQMSVLEIHPWGSHNDHLEEPDRIIIDLDPD
ESLPWSTVCEAALEVRSLLDAMKLKSFLKITGGKGLHVCFPVTPEHDFSIIKAWTHGLVQ
AMETARPELYLSKMSKAARTGKIYLDYLRNERGATAVAPYSMRARTGLPVSVPLEWEELA
GSERPRYTVKDFATWQHRLARDPWQAVLKVKQTIPKDALERFAGKTKRS
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaggcaaagaaggcctcgacttccgcagcatccagcgcaggcgacgctgtcgat
gaacaactcgcacgctatcgctccatgcgcgactttaaggtcacagcagagccaagcggc
gggacaaaatcgaagaagcccgaagcgcttccctttgtcatacagaagcacgcagcaacg
cgcctccactacgacttccgcctgggttggaacggcgtcctgaagagctgggcagtcgcc
aagggtcccagctacaacgtgcatgaccggcgactggccgtgcaggtagaagaccatccc
atggagtacggcggcttcgaaggcatcatccctcgcggccaatacggtgggggcaccgtc
atggtgtgggaccagggaacttgggagccgcacgtcgacgtggatgagggtctgcgcaaa
ggctcactcaagttcggcatcaacggcaccaagatgcacggcaactggaccctcgtccgc
atgggcggcaaggccgcgcaggaaggcaagcccaactggctgctgatcaaggagcacgac
gacttcgagcgcggccccgacgatccctgcatcacggaagagatgcccaactcagccgtc
accggccgcacactcgaagagatcgccacagccagcacgcacgtgtggaacagcaaggag
accgccggcgagggccctgcctggtaccgggatcgtgcacgtgatgccgacgcggcctcg
accagcgacaaagcagccagcaagcctgcagcgaagccctccgctaagaccacaagtaag
gcatcaccgaaacaggcaaagtctcctccagtagttcccgcacaaatcgaaaagctgccg
caagagaagctgccagacttcttgaagccacagctcgcaggagagacaaccgcaccgccc
gcgggcgacgaatgggtgcacgaactcaaactcgacggctaccgggtgcaggcacgcaaa
cacggtaacaacgtggaactctacacacgcagcggcctcgactggacgcaccgaatgaag
cccatcgctgaagcggttaaacaactcgcagtggaggatgccatcctcgacggtgaagta
tgcgttctcgatgacaaaggcctctcaagcttcgcgcgcctgcaggcctcctttgagaag
aacgagaagcacccactcaccttcttcgtcttcgacctgctgcacctcaacggacacaac
acacgcgccctgccgctgcgcgaacgcaaagccctcttgcatagcttagtcaccgaggac
ggcgatgtccgcatgagcgaagacatgatcggcgatggcaccaggatctttcacgctgcc
tgcgaactgcacgccgaaggcatcatctcgaaacgcgcggacggcgcctacactccaggc
cgaagcgcacagtgggtcaagtcaaagtgcgtgcatgagcaggagttcgtcgtcggcgga
tgggttgacctttccaacggcacacgcggcatcggttccctcttactcggctactacgac
gatgcaggcaagctgatctacgccggccgcaccggcaccggcttcacgcagaagatccac
aagatgctccgcgacaaactcgacgccctcgagcagaagacgatgcccttcaccgccatc
agcgcagaaggccgccgcggtgcccactgggtcaagcccgaactcgtcgtacaggtgcgc
ttctccacgtggaccggggaccagcaggtccgacaggcgtcgtatcaaggcctgcgcgaa
gacaagccagcagacgaagtacgccgcgagatcggcccaccctccgcaaaatacaagcct
gtcgcagccagcacaaaagccgatcccgagcccagcgcgtccactgaagtcgtccacaag
gccaaggcaaacaaagtggtcagcatcaacgcaaagaaggacgcgaagcctactagcgct
cagaagaatgcagctgcagccaccacgccaatgccggcaatccgcctgactcaccccgac
aaaatagtcgatcccgagagcggcatcaccaagcagcaactcgcagagttcctatgggcc
gtcgcaccgcagatgctcccacacatcgccgaccgtccactcagcctcgtccgctgccca
gaaggctcttcgaaccaatgcttctaccagaagcacgtcaatcacatgctgccaaaaggc
gtcggctccgtgatggtcgcggacaagaaaggcggcgcacccgagccctacatcacgctg
aacgacgcggaagcactcgccgggctggcgcagatgtctgttcttgagatccacccgtgg
ggctcgcacaacgaccacctcgaggagcccgaccgcatcatcatcgacctcgaccccgac
gagagcttgccctggtccaccgtctgcgaagccgcgctggaagtgcgcagcctgctcgac
gccatgaagctgaaaagcttcctcaagatcacaggcggcaagggcctgcacgtatgtttt
cccgtcacaccagagcacgacttctcgatcatcaaggcttggacgcacggcctcgtgcag
gcaatggaaaccgcccgtcctgaactctacttgtcaaaaatgtcgaaggccgcacgcacc
ggcaagatctatctggactatctgcgcaatgaacgtggcgccaccgccgtggcaccctac
agcatgcgagcccgcacaggactaccagtaagcgtgccgctggagtgggaagaactcgcc
ggcagcgaacgcccgcgctacaccgtcaaagacttcgcaacatggcagcataggctggcg
agagacccctggcaggccgtgctcaaggtgaaacagaccataccaaaggatgctctggag
cgcttcgccggaaagacgaagcgctcctga
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