Takifugu rubripes (torafugu): 101064061
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Entry
101064061 CDS
T02386
Symbol
supt5h
Name
(RefSeq) transcription elongation factor SPT5 isoform X6
KO
K15172
transcription elongation factor SPT5
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
101064061 (supt5h)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tru03021
]
101064061 (supt5h)
03019 Messenger RNA biogenesis [BR:
tru03019
]
101064061 (supt5h)
Transcription machinery [BR:
tru03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
101064061 (supt5h)
RNA polymerase I system
101064061 (supt5h)
Messenger RNA biogenesis [BR:
tru03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
101064061 (supt5h)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW
Spt5-NGN
Spt5_N
DUF150_C
DUF3912
Ribonuc_P_40
DUF6406
Arabino_trans_N
Motif
Other DBs
NCBI-GeneID:
101064061
NCBI-ProteinID:
XP_003976693
UniProt:
H2RZ98
LinkDB
All DBs
Position
11:379903..391237
Genome browser
AA seq
1082 aa
AA seq
DB search
MSDSEDSDFSDNQSERSSDGEAEEVEENEEETASPVGSDKVAEEEGEDLDDEEEYDEEEE
EEDDDRPRKKPRHGGFILDEADVDDEYEDEEDQWEEGAEDILEKEEAEVSNIEHMALDED
HSGSRRLQNLWRDSREEALGEYYMRKYAKTPGGEHYSGGSEELSDDITQQQLLPGVKDPN
LWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPDHVKGYIYVEAYKQTHVKSA
IEGIGNLRMGLWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVEP
SQNTISLKMIPRIDLDRIKAKMSLKDWFAKRKKFKRPGQRLFDAEKIRSLGGEVSHDGDF
MIFEGNRYSRKGFLFKSFAMSAVITDGVKPTLSELEKFEDQPEGLDLEVVTESGKEREHN
LQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDHVK
VIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWGEL
VQLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVKDI
VKVIDGPHSGREGEIRHLFRGFAFLHCKKLVENGGMFVCKTRHLVLAGGSKPRDVTNFTV
GGFAPMSPRISSPMHHGGGGAPQRGGGGGGGMWRGRGRRDNELIGQTVRISQGPYKGYIG
VVKDATESTARVELHSTCQTISVDRQRLTTMGAKRHSGMTSAHSRTPMYGSQTPMYGTGS
RTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPSNPNTPSRNEEEYDFGYDD
EPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYAAPSPQGSY
QPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPSPGG
YNPHTPGSNIEQGSSDWVTTDILVRVKDSFMDLMGQTGVIRSVTGGMCSVFMQESEKVVS
ISSDHLEPVTPTKNNKVKVIMGEDREATGILLSIDGDDGIVRMELDDQLKILNLRFLGRL
EH
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacagtgaggacagtgacttttctgacaaccagagcgagcgcagcagtgatggg
gaggccgaggaggtggaggaaaacgaggaggagaccgctagtcctgtgggcagtgacaag
gtagccgaggaagagggggaggacctggacgacgaagaggagtatgatgaagaggaggaa
gaggaggatgatgatcgtccaaggaagaagcccaggcacggggggttcatcctggacgaa
gctgatgtggatgatgagtatgaagatgaggaggatcagtgggaggaaggtgctgaagac
atcctggagaaagaagaggctgaagtgtccaacattgagcacatggctctggatgaagat
cactctggatccaggcggctgcagaacctctggagggactccagggaggaggcgttgggg
gaatactacatgaggaaatatgccaagacacctggaggcgagcattactccggaggctct
gaggagctgtctgatgacatcacccagcagcagctacttcctggagtcaaagatcccaac
ctatggacggtcaaatgtaagattggggaggaacgggcgacggccatcgcgttgatgagg
aagttcatcgcctaccagttcactgatacaccactgcagatcaagtccgtggtggccccc
gatcacgtcaaaggttacatctacgtggaggcatacaaacagacgcacgtcaagtcggcg
attgagggaatcgggaatctgagaatgggtctgtggaaccagcagatggttcccatcaag
gagatgactgatgtcctgaaggtggtcaaagaggtcactaacctgaagcctaaatcctgg
gtccgactcaagagaggcctgtacaaggatgacatcgctcaggtggattatgtggagcca
agccagaacaccatctccctgaagatgatcccgcggatcgacctggaccggatcaaggcc
aagatgagcctgaaagactggtttgccaagagaaagaagttcaagaggcctggtcagagg
ctgttcgatgcagagaagatcaggtctctaggtggggaggtgagccatgacggagacttc
atgatcttcgagggaaaccgttacagccgcaaaggtttcctgtttaagagttttgccatg
tcagctgtgatcacagacggagtaaagcccaccctgtcagagctggagaagtttgaggac
cagccagaagggctcgacttagaggtggtcacagagtcaggtaaagagcgagaacacaac
ctgcaggctggagacaatgtggaggtgtgtgagggagagttgatcaacctgcaggggaaa
atcctgagtgtggacggcaacaagatcaccatcatgcccaaacacgaggacctgaaggac
cctctggagtttcccgctcatgagctgaggaaatacttccggatgggcgaccacgtgaag
gtgattgctgggcgctacgagggcgacacgggcctcatcgtcagggtggaggagaacttc
gtcatcctgttttctgacctcaccatgcacgagttgaaggtgctgcccagagacctgcag
ctctgctctgagacggcgtcgggcgtggacgccggcgggcagcacgagtggggcgagctg
gttcagctggatccgcagacagttggagtcattgtccggctggagagggagacgtttcag
gtgctgaacatgcacgggaaggttctgaccgtccgccatcaagcagtgaaccgcaggaag
gacaaccgcttcgccgtggccttggactcggagcagaacaacatccacgtcaaagacatc
gtcaaggtgatcgacgggccgcactcgggtcgtgagggggagatccgccacctgttccga
ggctttgccttcctccactgtaaaaagttagtggaaaacggcggcatgtttgtgtgtaag
actcgacacctggtgttggcgggcgggtccaagcccagagacgtcaccaacttcacggtg
gggggtttcgctccaatgagtcctcggatcagcagccccatgcaccacggcgggggaggg
gctcctcaaagagggggtggaggaggaggcgggatgtggcgtgggaggggacgacgggac
aatgagctgattggtcagacggttcgcatctctcagggtccctacaaaggttacatcgga
gtggtgaaggacgccacagagtccacggcccgagtggagcttcactccacctgccagacc
atctccgtggaccggcagcggctgacgaccatgggagcaaagagacacagtggaatgacc
tccgcccacagtcggacccccatgtacggctcccagacccccatgtacggcaccggatca
aggacccccatgtacgggtcgcagacgccgctgcacgatggaagccgtacgcctcattat
ggctctcaaaccccgctgcatgatgggagtaggacaccaggtcagagtggagcctgggat
cccagcaaccccaacacaccttccagaaatgaagaagagtacgactttggctacgatgat
gagccttccccctcgcctcaaggctatggcgggacccccaaccctcagaccccggggtac
ccagaagtcccctcaccacaggtcaaccctcagtacaacccccaaactcctggaacgcca
gcgatgtataacacagagcagtactccccctatgcagccccctcccctcagggctcctat
cagcctagtcccagtcctcagagctaccaccaagtggcgccctcacctgttggttaccag
aacacacactctcccgccagctaccatccgacgccgtctcccatggcctatcaggccagt
ccaagcccgagtccagtgggttacagtccaatgacgcctggagcgccctctcctggaggg
tacaaccctcacaccccaggctccaacattgagcagggcagcagtgactgggtgaccacc
gacatcttggtccgggtcaaggactctttcatggaccttatgggacagaccggtgttatc
aggagtgtcacggggggcatgtgctccgtattcatgcaagagagcgagaaggtggtcagc
atcagctcggaccacctggaacccgtcactcccaccaaaaacaacaaggttaaggtgatc
atgggagaggacagagaggccacggggatcctcctgagcatcgacggagatgacggcatc
gtgcggatggagctggacgaccagctgaagattctgaacctgcgtttcctgggacgcctg
gagcactaa
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