Takifugu rubripes (torafugu): 101070705
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Entry
101070705 CDS
T02386
Symbol
thoc1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03013
Nucleocytoplasmic transport
tru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101070705 (thoc1)
09122 Translation
03013 Nucleocytoplasmic transport
101070705 (thoc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tru03019
]
101070705 (thoc1)
03041 Spliceosome [BR:
tru03041
]
101070705 (thoc1)
Messenger RNA biogenesis [BR:
tru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
101070705 (thoc1)
Spliceosome [BR:
tru03041
]
Complex C
Other components
EJC/TREX
101070705 (thoc1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
101070705 (thoc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
Motif
Other DBs
NCBI-GeneID:
101070705
NCBI-ProteinID:
XP_029686501
Ensembl:
ENSTRUG00000013518
LinkDB
All DBs
Position
22:2780404..2784751
Genome browser
AA seq
654 aa
AA seq
DB search
MSPSLFNFVEAKDKFTTSAKHALTGKTGKHLVNAFNQIPGSETEKKTTLDQALRGVLGDQ
IVEQKSSCDDYLSLIYLSIDSVTEGICSATTPFVLLGDVLDCLPLDQCDKIFSFVEENVS
TWKSNSFYTAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQF
NLDNITVFNKNEQESTLGQKNTEEKEDGMEVEEGEMGEEDAPAPCSIPIDYNLYRKFWTL
QDYFRNPVQCYDKFSWMTFVKYSDETLAVFKSYKLDDMQASKRKLEDLRASGGDHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSGSVLNDDQAAWIEETSKLA
YQLLREIPPDGDKFATMVEHILGTEENWNSWKNEGCPSFVKERTVDDKPKRPARKRQAPE
DFLGKGPDRKIFMGNDELTRLWNLNHDNMDACKSESREFVPSLDDFFSEAIEQADPANMV
EDEYKVVRNPNYGWRALRLLSRRSPHFFQPTNQKFKSLADYLDSMVSKLAKELPKDIPCE
EIKTGEEDDDDNGDNLLKDSNDSPSMQNKMVSNQQMDDVAAKLGARWKTLATHLEMKAAE
LREIETDSEDVDMQAKLLLVAWQDREGNQATVENLAAALNVAGFSQMAETLSEG
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccgtccttatttaattttgttgaagctaaagataaattcacgacgtctgctaaa
catgccctcactggaaaaaccggaaaacacctggtaaatgcttttaaccagattcctggg
agcgagacagaaaagaagaccacccttgaccaggcactgagaggggttctcggcgatcag
attgttgagcagaagtcgagctgcgatgactacttgtccctcatctacctgagcatcgat
tctgtaacagaagggatctgctctgctacgacgcctttcgtcctgttgggagacgtcctc
gactgtctgcctctcgaccagtgtgacaaaatattctcttttgtcgaggaaaatgtatcc
acctggaaatcgaactcattttacactgctgggaaaaactacttgttgaggatgtgcaat
gatctgttacggaggctgtccaaatcccagaacactgtattctgcgggcgaatccagctg
ttcttggcgcgtcttttcccgttgtctgaaaagtcaggtctcaatctgcagagccagttt
aacctggacaatatcacagtgttcaacaagaacgagcaggagagcactctaggccagaag
aacacagaagaaaaagaggatgggatggaggtagaggagggggaaatgggggaggaagat
gcccctgccccttgttccatccccatcgactacaacttgtacaggaaattctggacgctg
caggactacttcaggaaccccgtgcagtgttacgataaattctcttggatgactttcgtt
aagtattcagatgaaaccttggcggttttcaaaagctacaaactggacgacatgcaggcg
tctaagaggaagctggaggacctgagagcgtctggaggggaccacgtttactttgccaag
tttttaactagtgagaagctgatggacttgcagctgagcgacagcaacttcaggcggcac
attctgctgcagtacctcatcctgttccagtacctgaagggtcaagtcaagtttaaaagc
tccggctctgttctgaatgatgatcaggctgcttggattgaagagacttcgaaactggct
tatcagcttctgcgggagattcctcctgatggagacaagtttgccaccatggtggagcat
attcttggcacagaggagaactggaatagttggaaaaacgaaggctgtccgagctttgtg
aaagaaaggacagtggatgacaaacccaaaagacccgccaggaaaagacaagctccagag
gacttcctgggaaaagggccagaccgcaagatatttatgggaaatgatgaattaactcga
ctttggaacctgaaccacgacaacatggacgcctgcaagtctgagtccagggaatttgtt
ccttcccttgacgacttcttctcagaggccatcgagcaggccgaccctgctaacatggtg
gaggacgagtataaggtcgtgcggaacccaaactatggctggcgagctctgaggctgctt
tccaggagaagtccgcatttctttcagccaaccaatcagaagttcaagagcctggcagat
tacctggacagcatggttagcaaactagccaaagagctgccgaaggacattccctgtgaa
gagatcaagacaggagaggaggacgatgatgataacggggacaatctcctcaaagacagc
aacgacagtcccagcatgcagaacaagatggtgtccaaccagcagatggacgacgtggca
gccaagctgggcgctcggtggaagacgctggccactcatctggagatgaaggcggccgaa
ctgagggagatcgagacggacagtgaagatgtggacatgcaggccaaactgctgctggtg
gcctggcaggacagagaggggaaccaggccaccgtggagaacctggcggcggctctcaat
gtcgccggattctcccagatggcagaaaccctcagcgagggttaa
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