Takifugu rubripes (torafugu): 101076744
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Entry
101076744 CDS
T02386
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101076744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tru03021
]
101076744
03019 Messenger RNA biogenesis [BR:
tru03019
]
101076744
Transcription machinery [BR:
tru03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
101076744
Messenger RNA biogenesis [BR:
tru03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
101076744
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
CFIA_Pcf11
Pcf11_helical
zf_C2H2_6
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
101076744
NCBI-ProteinID:
XP_029704451
LinkDB
All DBs
Position
15:complement(5692633..5699253)
Genome browser
AA seq
1413 aa
AA seq
DB search
MKIELEFEHTKSQLAGGFTLPSSAPVPATPSMTSKPTTQAAPVLRPWIPPQTKPKSSTRD
PHLNRPGSPTAPQPKEQSAERKADVVTTGNAAVTSEKSSRPDKTRTQKKESKSKSPPSMS
KMISPKNKQSETEAQKSADPKKDPRLKKRSHDKMDNKDDEAKDKKISAEKKERQEDTRRG
EPQIELELEQAKAQLAGGFTLPSSAPVPTTPSMTSKPTTQAAPVVRPWIPPQTEPKSSTR
DPRLNRPGPPTAPQPKEQSAERKADVVTTGNAAVTSEKSSRPDKTRTQKKESKSKSPPPM
SKTISPKNKQSETEAQKSADPKKDPRLKKRSHDKMDNKDDEAKDKKRSAEKKERQEDTRG
GEPQRSGKGRVMNGTVNKHEHSESTEKVDLTSGKIAWTHARKRPHSRSRSRSPGTSPKIK
ERRSPKSRVRSSSLSPSLSRKTNKARQLCPQQMDHGKPGREDRLSVKKNQSEARTLKRPT
EEQHSETRDNHSPSSHNGGGKENKDAPHRWRSGWEENKHLKPSEDSHMKLGLPQHKQYST
PNRPPTSRTPKHRLNVDPNLQIPEILNAASKKDLLRREEKQQQHSGSWDDSGVFSKKQSL
LPTPSSAEPHPLKTKAKLKPQVTHRPNVGEWEGEQNSGESKELAPSEKADGQNLGPSLHR
HNRVPLDASDERRSKENEDQRVPPVLMNEEYNHGKEFPKLKLLPGLRFRRRADPRDSNER
KWNSPLMERQRYDEDQKSGYDALRKYGPSADSRVSDPRKLDQSSGPVVHRKCPSPGQQRE
PAEIRPISRFKSLHSEHSDDGPLNLDGRPSHTHPPPPKSTHTGPGPGGQLASLHLHRDSP
GPMPPYDGGHPTSLYDGPVHRGPSRANPPGWYEGGGPEHYYDVTQFEGPHPQCPGRLDGG
RPLQRFDRHGPMRVGDGMGRFDCQPHPHGPNRFDGQGPGPARYERYNNMGPGPGSGQNQR
PMRFETPLNQMGPMRFEGPGPRRFDGPMQAGPRFDMPHQGGAPVYDPVHSQQVPGRFPPQ
HNLQPPIRPIVPPMYENPMGPQQNLNMGQHFPEPVDPQFPVGQMAYSAQAPAFNQQGSAS
FYNPSAPGLSMQQPVNLKQPFPSQSAVPFGHQIPQMNHFGQMDFNELLSKLISCGIIKAA
QPEATLTSGTASGTAPAGSPLAKGDDEDDPELLDNDVPDLRSFPIKAMKLRYESVVTKLY
SGTQCGFCSMRFSSRQPDLYRDHLDWHYRQNHNRKDPSKKVTHRRWYSGIKDWIEFEEIA
DRKEQAKSPFFEKENEVEVQNNQAAPQAKEIQCVKATKDQVGESCEICQEQFETYWVEEE
EDWFLKNAIRVDDKIFHPSCFEDYKNSYIDVTPSPNKLLTDHPLSSFIKTEDGVEETACS
VSATVKQEVESELPDIKAEEVLTVTLQSEQSDV
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atgaagattgagctggaatttgagcacactaaatcccagttggctggaggatttacattg
ccatcatcagctccagttcccgctactcccagcatgacatccaagcctaccacccaagct
gcgccagtgctccggccctggatcccccctcagacaaaacccaagtcgtccacccgagac
ccccacttgaaccgccctggctctccaactgcacctcagcccaaagagcagtctgcggag
agaaaagcagatgtggtcacaactggaaatgctgctgtgacttctgagaagtccagccgg
ccagacaagaccaggacacaaaagaaagagtctaagtccaagtctccaccttcaatgagc
aaaatgatctcacccaaaaacaagcaatcagagactgaagcccagaagtcagccgacccc
aagaaagatccaaggctgaagaaacgttcacatgacaagatggacaacaaagacgatgag
gcaaaggacaagaaaataagtgctgaaaagaaggagcggcaggaggatactcggagagga
gagcctcagattgagctggaacttgagcaggctaaagcccagttggctggaggatttaca
ttgccatcatcagctccagttcccactactcccagcatgacatccaagcctaccacccaa
gctgcgccagtggtccggccctggatcccccctcagacagaacccaagtcgtccacccga
gacccccgcttgaaccgccctggccctccaactgcacctcagcccaaagagcagtctgcg
gagagaaaagcagatgtggtcacaactggaaatgctgctgtgacttctgagaagtccagc
cggccagacaagaccaggacacaaaagaaagagtctaagtccaagtctccacctccaatg
agcaaaacgatctcacccaaaaacaagcaatcagagactgaagcccagaagtcagccgac
cccaagaaagatccaaggctgaagaaacgttcacatgacaagatggacaacaaagacgat
gaggcaaaggacaagaaaagaagtgctgaaaagaaggagcggcaggaggatactcgggga
ggtgagcctcagagatctggcaaagggagggttatgaatggcacagtgaacaaacatgag
cacagtgagtctacagagaaggttgatttgacgtctggtaagattgcttggacacatgct
aggaaacgtccccattcacggtccaggtcacgctcgcctggcacctccccaaaaataaag
gaaaggcgctcaccgaagagccgagtcagaagcagctctttgtctccttcactctctcgc
aaaacaaacaaggctaggcagctctgtccacagcaaatggatcacggcaaacctggacga
gaggacaggctttcggtcaaaaagaaccaatcggaagccagaacgttgaagagaccaaca
gaggagcagcactctgaaaccagagacaaccactctccaagtagccataatggaggaggc
aaggagaacaaggatgctcctcatcgctggaggagtggctgggaggagaacaagcatctc
aagccatcagaagactcccacatgaagcttggactgccacaacacaaacagtacagcact
ccaaatcgacccccaacttctagaacaccaaagcaccgacttaatgtggatcccaacctg
cagattcctgaaatcctcaatgctgcttccaagaaagacctgctgagaagggaggagaaa
cagcagcagcactctgggagttgggatgactctggagttttctccaagaagcagtcactg
ttacccacaccctcctccgctgaaccccaccctctaaaaaccaaggcgaagctgaaaccc
caggtcacccaccgacctaatgtgggggagtgggagggtgagcagaattctggagagagc
aaggagttggcaccgagtgagaaagcagatggccagaaccttggaccttcactgcaccga
cacaacagggtccctctagatgcctcagatgagagacggagtaaagagaatgaggaccag
cgagtgccacctgttctcatgaatgaggagtacaaccatggtaaggagttccccaaactg
aaattgttgcctggtttgcgcttcaggcggagagctgacccacgagactccaatgagcga
aagtggaactcgccactaatggagcgccagcggtatgatgaagaccagaagagtggctac
gatgctctaagaaagtatggcccatctgcagactcccgggtgtctgacccaaggaagctc
gaccagtcgtctgggccagtggtccacagaaaatgtccaagtccaggtcaacagagagag
ccggcagagattcgcccgatttcacgctttaaaagcctacacagtgagcattctgatgat
gggcctctcaatttggatggacgaccttcgcacactcatcctccacctcccaaatccact
catacagggccaggcccagggggacaactggcttctctccatctgcaccgtgattcgcca
ggacccatgcctccttatgatggaggtcaccccacctcactttatgatggacctgttcac
agaggcccgtccagagctaaccccccaggctggtatgaaggcggaggccctgagcattat
tatgatgtgacacagtttgagggccctcatccccaatgtcccggcaggctggatggtggt
cgccctcttcagaggtttgatagacatgggccaatgagagttggagatggaatggggagg
tttgactgtcaacctcacccccatggcccaaacaggtttgatggacaggggccaggacca
gcccgttatgagcgatataacaacatgggacctgggcctggctctggacaaaaccagcgg
ccaatgcgcttcgaaacccctctgaatcagatgggcccaatgcggtttgaaggtcctggt
ccacggcgctttgatggacctatgcaggcgggaccaaggttcgatatgccccatcagggt
ggtgctccagtctatgatcctgtccacagtcaacaggtcccgggcaggtttcctcctcaa
cacaacttgcagccacccattaggcccattgtccccccaatgtatgagaacccaatgggt
ccacagcagaatttaaacatgggtcagcattttccagagcctgtagaccctcagttccct
gtcggacagatggcatactcggctcaggcgccggcctttaaccagcagggctctgcttcc
ttctataacccgtctgcccctggcctcagcatgcagcaacctgtgaacctcaaacaacca
ttcccatctcagagtgcagtgccttttggacatcagattccacagatgaaccactttggt
caaatggattttaatgagcttttgtccaaacttatttcctgcggcatcatcaaagctgca
caaccagaggctactctgacgtcgggcactgcttcaggcaccgctcctgctggctcacct
cttgcaaagggggatgatgaggatgacccagaattgttggataacgatgtccccgacctc
cgtagctttccaatcaaagcaatgaaattacggtatgaaagtgtggtgactaagctgtac
tctgggacgcagtgtggattttgcagtatgaggttctcctctcgacaacctgacctgtat
cgtgaccatctggactggcactatagacagaaccacaacaggaaggacccaagcaagaaa
gttacccaccgtcgctggtatagcggcatcaaggactggatagagtttgaggaaatcgct
gaccggaaggagcaagcaaaaagtccgttctttgagaaggagaatgaggttgaggttcag
aataatcaggctgcaccacaagcgaaggagatccagtgtgtgaaggccacaaaagaccag
gttggagagtcatgtgaaatctgtcaggagcagtttgagacatactgggtggaagaagag
gaagactggttcctgaaaaacgccatcagggttgacgataagattttccatccctcctgt
ttcgaagattataaaaattcgtacatcgatgttacgccatcacccaacaagcttctcact
gatcatccactgagctcctttatcaagacagaagatggggtcgaggagacggcgtgctct
gttagtgccacagtcaaacaggaagtggagtctgagcttccagatataaaagcggaggag
gtattaacggtcactcttcagtcggagcagagtgacgtgtaa
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