Thermus scotoductus: TSC_c13230
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Entry
TSC_c13230 CDS
T01414
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tsc
Thermus scotoductus
Pathway
tsc03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TSC_c13230 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsc03400
]
TSC_c13230 (mfd)
Enzymes [BR:
tsc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TSC_c13230 (mfd)
DNA repair and recombination proteins [BR:
tsc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TSC_c13230 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
UvrB_inter
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ADW21943
UniProt:
E8PRB4
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All DBs
Position
complement(1270069..1273011)
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AA seq
980 aa
AA seq
DB search
MEIALERYYGHRLALPQVVAALIFAREKPPALLLVPEERLRRYRDLLAFGVPVYVNPGLE
AWEERALFVMSYEEALAPFPEDPSAWRLVLEVGRSYPRRELLDRLLRMGYARDEDYRVLG
EVLELGGVRLEFFGEELERLLVEGEERKRHILLPKPGKAEAFTSRKLLHFPGPVYLDTPA
LAPKEVWSLLRGRQVVALGSGVELPPLDLGMRPLPPYRGSLKSLEKDLARWLGEGRGRRV
SLFVAHERTLDYLKRRLAPFRPQVPERFPGPRGQLSLFRGAFEGGAEWGEEVFLTEALVF
ATGAVRARLRVGEGLTDPGALSPGDFLIHPDHGVGQYLGLETREVLGVRRDYLVLRYKGE
GKLYLPVEQLPLLRRHPGTTDDPPELSSLGKGEWQRLKEKARKDVEELAARLLILQAKRK
ATPGRAFPPLPEWDPLIERGFPHELTPDQKQALEEVLRDLEAPFPMDRLISGDVGFGKTE
IALRAAHRVVGHGAQVAFLVPTTLLAEQHGKTFRERFAGLPVRIGVLSRFTPEKEEKSIL
EGLEKGTLDIVIGTHRLLQPDVRFKDLGLLIVDEEHRFGVAQKERIRELKAEVDTLYLSA
TPIPRTLYSALVGLKDLSSIKTPPPGRKPIRTFLAPFDPLLVREAILFELERGGKVFYVH
DRVASIEARRRYLENLVPEARIGVVHGQMPEGLVEETMLLFAEGAYDVLLATTIIESGLD
VGEANTILIERADRLGLATLYQLRGRVGRREQEAYAYLFHPPRLTEAAEKRLNAIADLSD
LGSGHLLAEKDMEIRGVGNLLGPEQHGHIRALSLEVYSELLEEAIRKLKGEAKEERRHVT
LDLGVSARLPAEYVPSLEGRSRYYGRLAEARSLAEVSRIARELKDRYGPLPEEAENFLAL
ARLRLVAERKGVVSITEDLTYLQVIFPRWPLDYDAKALRQLPFRVELTQYPPGFRLEKKG
LKPRDYPEALLQALYLFADN
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgccctggaacggtattacgggcaccgcctggccctgccccaggtggtggcg
gccttgatttttgcccgggagaagcccccggccctccttctggtcccagaggagcgcttg
aggcgctaccgggacctcctagcctttggcgtgccggtttacgtgaaccctggcctcgag
gcctgggaggagcgggccctcttcgtgatgagttacgaggaggcccttgctccctttcct
gaggacccctccgcctggcggctcgttttggaggtgggccgaagctatcctcgaagggag
ctcctggaccgcctcctgcgcatggggtacgcccgggatgaggattaccgggtgctgggg
gaggtgctggagcttggcggggtgcggctggagttctttggggaagagctagagaggctt
ttggtggagggagaggaacgcaagcggcacatccttctacccaagccgggcaaggccgaa
gcctttacctccagaaaactcctccactttcctggccccgtgtacctggacaccccagcc
ctggcccccaaggaggtctggtcccttttaagggggcgtcaggtggtggccctggggagc
ggggtggagcttcctcccttggacctggggatgagaccccttcccccgtacaggggaagc
cttaaatccctggaaaaggaccttgcccgctggctcggggaggggagggggaggcgggtt
agcctcttcgtggcccacgagcgcaccctggactacctgaaaaggcggcttgcccccttc
cgtccccaggtacccgagcggtttccgggtcccagaggccagctttcccttttcagggga
gccttcgagggaggggcggagtggggggaggaggttttcctcaccgaggccttggtcttt
gccaccggtgcggtgcgggccaggttgcgggtgggggaggggcttaccgaccccggggct
ctctcccctggggatttcctcatccaccccgaccacggcgtgggccagtacctgggcttg
gaaacccgggaggtgctgggggttaggcgggactacctggtcctccgctacaagggggag
gggaagctttaccttccggtggagcagctgccccttctcaggcgccatcccggcaccaca
gatgaccctccggaactttcttccctgggcaaaggggagtggcagcggcttaaggagaag
gccaggaaggatgtggaggagctggcggcacggcttctcatccttcaggccaagcggaag
gctaccccgggccgggcctttcctcccttgccggagtgggatccccttatcgagaggggc
ttcccccacgagctcaccccggaccaaaaacaggccctggaggaggtcctgcgggacctc
gaggctcctttccccatggaccggctcatctccggggacgtgggctttggcaagacggag
attgccctccgggctgcccaccgggtggtggggcacggggcccaggtggcctttttggtg
cccaccacccttttggcggagcagcatggcaagaccttccgggagcggtttgccgggctt
cccgtgcgcatcggggtgctttcccgctttacccccgagaaggaggagaagtccatcctg
gagggcttggaaaagggcaccctggacatcgtcatcggcacccaccgccttctccagccc
gacgtgcgttttaaggatctcgggcttttgattgtggacgaggagcaccgcttcggggtg
gcgcagaaggagcggatccgcgagctgaaggccgaagtggataccctttacctctcggcc
acgcccatcccccgtaccctttattccgccctggtgggcctgaaggacctatccagcatc
aaaaccccaccgccaggccggaagcctattcgcaccttcctggctccctttgaccccctt
ctggttcgggaggccatcctttttgagctggaaaggggaggcaaggtgttttatgtgcac
gaccgggtggcctccatcgaggcgaggaggcgctacctggaaaacctggtgcccgaagcc
cgcatcggggtggtccacggccagatgcccgaaggcctggtggaggagaccatgctcctc
ttcgccgagggagcttacgatgtccttctggccaccaccatcatcgagtcgggcctggac
gtgggcgaggccaacaccatcctcatcgagcgggctgaccgtctgggcctcgccaccttg
taccagctccggggccgggtggggcggcgggagcaggaggcctacgcctatctcttccat
cctccccggctcaccgaggcggcggaaaagcgcctcaacgccatcgctgatctttccgac
ctgggaagcggccatctcctggcggagaaggacatggaaatccgcggcgtggggaatctc
ctgggccctgagcaacacgggcatatccgggccctctccctcgaggtctacagcgagctt
ctggaggaggccattcgcaagctcaagggcgaggccaaggaggagagaaggcacgttacc
ctggacctgggagtttccgcccggcttcctgcggagtacgtgccgagcctcgagggccgt
agccgctactacggccgcctggccgaggccaggagcctggcggaggtttctcgcatcgcc
agggagctcaaggaccggtatggcccccttcccgaggaggcggaaaacttcttggccctt
gcccggctccgcctggtggcggagcggaaaggggtggtctccatcacggaggaccttacc
tacctccaggtcatctttccccgctggcccctggattatgacgccaaggctttgaggcaa
ctgcccttccgggtggagcttacccagtatcctcccggctttcgcctggagaaaaagggc
ttgaagccccgggactaccccgaggctttgctccaggccctgtacctcttcgccgataac
tag
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