Tsukamurella sp. PLM1: MTP03_02110
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Entry
MTP03_02110 CDS
T09545
Symbol
ligD
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tsd
Tsukamurella sp. PLM1
Pathway
tsd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MTP03_02110 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsd03400
]
MTP03_02110 (ligD)
Enzymes [BR:
tsd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MTP03_02110 (ligD)
DNA repair and recombination proteins [BR:
tsd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MTP03_02110 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BDH55272
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Position
complement(181806..184277)
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AA seq
823 aa
AA seq
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MTIVTGEESFSEGASGTFLPTAGAGPDNGPVAQIRENREVDGVGVQLTNLDKVLYPATGT
TKAEVIDYFQAIAPFALPHLHDRPLTRKRWPNGVDKTAFFEKRLPSHAPAWIRRGSQFHS
DGESQYPVIDNAAGMVWLGQQAALELHVPQWAFVPDDADPDRPEVPGPPNRLVLDLDPGP
VVTLDDCAALALRIRELLAAMDMDGYPVTSGSKGLHVYAPLPGGISANGARTVAHAIASQ
LEAESPELVTASMAKVQRGGRVFVDWSQNSASKTTVAPYSLRGRDHPWVAAPRTWDELAR
PGLRQLEFGEVLARALADGDLLAGLDGAAARPDGAEAPSAPPPEPVDLGEYRAKRDARKT
PEPFGGAPSTGDPIFVIQEHHARRLHYDFRLEHDGVLASWAVPKNLPDDPDINHLAVRTE
DHPMDYAAFEGSIPRGEYGGGDVTIWDHGTYELEKWRSNEVIVTLHGNRLQGKRYALIRT
GDKNWLAHLTKDKSAPAKPAAGLAPDPMLPTESGIDGLPAADWAFEGKWDGYRMIATVRG
GTVSLRTRSGRTVTGEFPEFESLAADLDGMDVVLDGEAVVLDPDGVPSFHLMAGGETRSG
AVRLYLFDVLSLNGVDLTKRPWTVRRQVLEGLAPLLEHDTAVSVPPLVDAMTGAEAAALS
AARGWEGIIAKRRDSPYLPGQRVRAWLKHKNWRDLQVAIGGWKPGKGSRANGIGSVLVGL
PAETGLVYLGSVGSGFSDRDLAALAEELEPLRMRRSPFTAPIDDPEARDAVWVLPKVIGD
VRYSSLRRGGHLRQPSWRGSGATCSPAICPPPTRRRGRAPRNS
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
gtgaccattgtgactggtgaggagtcatttagcgagggcgcgagcgggacgttcctcccc
actgcgggcgcggggcccgataatgggcccgtggcgcagatccgggagaaccgtgaggtc
gacggcgtcggcgtgcagctgaccaacctcgacaaagtgctctaccccgccacgggcacc
acgaaggccgaggtcatcgactacttccaggccatcgcgccgttcgcgctcccccacctg
cacgaccggccgctcacccgcaagcgctggcccaacggcgtggacaagaccgcgttcttc
gagaaacggttgccgagccacgcgcccgcgtggatccgccgcggcagccagttccactcc
gacggcgagtcccagtacccggtcatcgacaacgccgccggcatggtgtggctgggccag
caggccgcgctggagctgcacgtcccgcagtgggcgttcgtgcccgacgacgccgacccc
gaccgcccggaggtccccggaccgccgaaccgcctcgtgctcgacctcgatcccggcccc
gtcgtcaccctcgacgactgcgccgcgctcgcgctgcgcatccgcgaattgctcgccgcg
atggacatggacggctaccccgtgaccagcgggtcgaaggggctgcacgtctacgcgccc
ctgcccggcggcatctcggcgaacggggcgcgcacggtcgcgcacgccatcgcctcgcag
ctggaggccgaatcgcccgagctggtcaccgcgtcgatggcgaaggtccagcggggcggc
cgcgtcttcgtcgactggtcgcagaacagcgcgtccaagaccaccgtcgcgccgtactcg
ctgcgcggacgggaccatccgtgggtcgccgcgccgcgcacctgggacgagctcgcccgc
cccggcctgcgccagctcgagttcggcgaggtcctcgcgcgcgccctggccgacggcgac
ctcctcgccgggctcgacggtgccgccgcccggccggacggtgccgaggcgccgtcggcg
ccgccgcccgagcccgtcgacctcggcgagtaccgcgccaagcgcgacgcgcggaagacg
cccgagcccttcggcggcgcaccgtcgaccggcgatccgatcttcgtcatccaggagcac
cacgcgcggcgcctgcactacgacttccgcctggagcacgacggggtgctcgcctcctgg
gccgtgccgaagaacctccccgacgaccccgacatcaatcacctcgccgtccgcaccgag
gaccacccgatggactacgcggccttcgagggcagcatcccccggggcgagtacggcggc
ggcgacgtgaccatctgggaccacggcacctacgagctggagaagtggcgctcgaacgag
gtgatcgtgacgctgcacgggaatcggctgcagggcaaacggtacgcgctgatccgtacc
ggcgacaagaactggctggcgcacctcaccaaggacaagtccgcgcccgccaagcccgcc
gccggcctcgcgccggatcccatgctgccgacggaatccgggatcgacgggctccccgcc
gcggactgggccttcgagggcaagtgggacggctaccgcatgatcgcgacggtgcgcggc
ggcaccgtctccctgcgcacccgctcgggccgcacggtgaccggcgagttccccgagttc
gagtcgctcgccgccgatctcgacgggatggacgtggtgctcgacggcgaggcggtggtg
ctcgacccggacggcgtaccgtcgttccacctgatggcgggcggcgagacccggtccggc
gcggtgcggctgtacctcttcgacgtgctgtcgctcaacggcgtcgacctgacgaagcgc
ccgtggacggtgcgccgccaggtgctggaaggccttgcgccgctgctcgagcacgacacg
gcggtgagcgtgccgccgctcgtcgacgcgatgaccggagccgaggccgcggcgctcagc
gcggcgcgcggctgggaggggatcatcgcgaagcggcgggattcgccgtacctgccgggg
cagcgggtgcgcgcctggctcaagcacaagaactggcgcgacctccaggtcgcgatcggc
ggctggaagcccggcaagggctcgcgggcgaacgggatcggctcggtgctcgtgggcctg
cccgcggagacggggctcgtctacctggggtcggtggggtcggggttcagcgaccgcgac
ctggccgcgctggccgaggagctggagccgctgcgcatgcgccgctccccgttcaccgcc
ccgatcgacgatccggaggcgcgcgacgcggtctgggtgctgccgaaggtgatcggcgac
gtgcggtactcgtcgctgcgccggggcggccacctgcggcaacccagctggcggggttcc
ggcgcgacctgctccccggcgatctgccctccgccgacgaggcgccgtgggagggcccca
cggaatagttag
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