Thiosulfatimonas sediminis: THMIRHAS_16310
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Entry
THMIRHAS_16310 CDS
T06859
Symbol
holB
Name
(GenBank) DNA polymerase III subunit delta'
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
tse
Thiosulfatimonas sediminis
Pathway
tse03030
DNA replication
tse03430
Mismatch repair
tse03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
THMIRHAS_16310 (holB)
03430 Mismatch repair
THMIRHAS_16310 (holB)
03440 Homologous recombination
THMIRHAS_16310 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tse03032
]
THMIRHAS_16310 (holB)
03400 DNA repair and recombination proteins [BR:
tse03400
]
THMIRHAS_16310 (holB)
Enzymes [BR:
tse01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
THMIRHAS_16310 (holB)
DNA replication proteins [BR:
tse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
THMIRHAS_16310 (holB)
DNA repair and recombination proteins [BR:
tse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
THMIRHAS_16310 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
AAA
HolB_lid
ParD
DUF3775
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BBP46258
UniProt:
A0A6F8PW79
LinkDB
All DBs
Position
complement(1787778..1788797)
Genome browser
AA seq
339 aa
AA seq
DB search
MEAPLYPLAQLPWLRAPWLQWQQLQDRLGHAYLLLSAQGIGIELMVEQMAKQALCQHASS
QGACGQCVSCQLFSSGQHPDFFQLQRLEDKTTVGVDQVRQLIEKQNETSHQGGYKVIVVA
EVENLKLAAFNALLKTLEEPAQRTLFILTCAQQSRLPATIKSRCQKMTVSTPELAMALSW
LAQQRPQFDQALLKRALRLNWGAPLMALTWIDKGGVQEYAEWQEGLKQAQSNKKVLSKVI
LPWLKWPNPLRVFDYFYFWALMQNRKIVYAASVLEDKAAVLELLQFQQQVLQAKNAWQGN
ANKELVLENLLALWVQQNDQSKSEMRQKLFHEKLRRGLL
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atggaagcgcccttgtatccgttagcacaactgccttggttgcgcgctccttggttgcaa
tggcagcagttgcaagaccgtttgggacacgcctatttacttctttctgcacagggtatt
ggcattgagttaatggttgagcagatggcaaaacaagctctttgtcagcacgcatcctca
caaggggcttgcggtcagtgcgtttcttgtcaattattttcttccggtcagcatccagat
tttttccaactgcaacggcttgaagataaaaccacggtcggggtggatcaagtacgccaa
ctgattgaaaaacaaaacgaaacctctcaccaaggtgggtataaagttatcgtcgttgcc
gaggtcgaaaatctcaaacttgcggctttcaatgcgctccttaaaactttagaagagccg
gcacagagaacactgtttattttaacgtgtgcgcagcagtcaagattgcctgcaaccatt
aaaagccgatgccaaaaaatgacggtttcgacgccggaattggccatggctttaagttgg
ttagctcagcagcgtccgcagtttgatcaagctttgttaaaaagagcgttacgcttaaat
tggggcgcacctttgatggcattgacttggattgataaggggggcgtgcaagaatacgcc
gagtggcaagagggtttaaagcaagcgcaatcgaataaaaaagtgctttcaaaagtgatt
ttgccttggttgaaatggccgaacccgcttcgtgtgtttgattatttttatttttgggcg
ttaatgcagaatcgtaaaatcgtatacgcggcatcagtgcttgaggacaaagcggcagtg
cttgaactgttgcagttccagcagcaagtgctgcaagcgaaaaacgcttggcagggaaac
gccaataaagagttggttttggaaaatttgttggctttgtgggtacagcaaaacgaccaa
tccaaatccgagatgcgacaaaaattgtttcatgaaaaattacgcagaggattgttatga
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