Thermoanaerobacterium saccharolyticum: Tsac_1306
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Entry
Tsac_1306 CDS
T02137
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tsh
Thermoanaerobacterium saccharolyticum
Pathway
tsh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tsh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Tsac_1306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsh03400
]
Tsac_1306
Enzymes [BR:
tsh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Tsac_1306
DNA repair and recombination proteins [BR:
tsh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Tsac_1306
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AFK86317
UniProt:
I3VUX2
LinkDB
All DBs
Position
complement(1366169..1367092)
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AA seq
307 aa
AA seq
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MSMMDEKIPPMLAISGNVFDDPNWVYEIKWDGSRTIAFLSSSTKLQDRRLVNISHQFPEL
MNINKCLKSNEAILDGELIVLKDNKPSYRNIMMRKHQQNKLRIELLSKSNPAIFITWDVI
YVDGKELLNYPLIERREILSKIVSESNLIRISDYIFGHGKTLFAETGKKQLEGVMAKKAD
SKYYLGKRSSLWQKFKHHIVLNAVILGYMIDKTALVLGLYNEEDKLVHIGNVESGISQKE
LSSFLYVANDLKVGSEFYGLAINNVQWIMPFIVCKVKFMEWSENFKMRAPSFLEFALDVK
PTECRFM
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
ttgtccatgatggatgaaaaaattcctcctatgctggctatatcgggaaatgtatttgac
gatccgaattgggtatatgaaatcaaatgggatggttcaaggacaatagcatttctttca
tcttctacaaagcttcaagacagaagacttgtaaatataagccaccaatttccagaactt
atgaacataaataaatgtctaaaatcaaatgaagccatacttgacggtgaattgatcgtt
ctaaaagacaataaaccaagctatagaaacataatgatgcgaaaacaccaacaaaacaaa
ctaagaatcgaacttttaagtaaatccaatcccgcaatatttataacatgggatgtaata
tatgttgatggaaaagagttattaaactacccactgattgagcgcagagaaattttaagt
aaaatcgtcagtgaaagcaatctaataaggatatctgattacatatttggacacggcaaa
actttatttgcggaaactggcaaaaaacaattggaaggagtaatggctaaaaaagcagac
tcaaaatattatttaggaaaaagaagcagtctgtggcaaaaattcaaacaccacatagtg
ctaaatgctgtaatattaggttatatgatagacaaaactgcgttagtcttgggcctttac
aacgaggaggacaaacttgtgcacattggaaatgtagaatctggaatatcacaaaaagaa
ttatcatcgttcttatatgtcgccaatgatctgaaggtcggatcggaattttacggtctt
gccattaacaacgttcaatggataatgccttttattgtatgtaaggttaaattcatggaa
tggtcagaaaatttcaaaatgagagcaccatctttcttagaatttgccttagatgtgaaa
cctaccgaatgcagattcatgtaa
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