Tsukamurella tyrosinosolvens: ASU32_05555
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Entry
ASU32_05555 CDS
T05267
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tsm
Tsukamurella tyrosinosolvens
Pathway
tsm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ASU32_05555
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsm03400
]
ASU32_05555
Enzymes [BR:
tsm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ASU32_05555
DNA repair and recombination proteins [BR:
tsm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ASU32_05555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
HEM4
AAA_22
MFD_D3
IstB_IS21
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AUN42856
LinkDB
All DBs
Position
complement(1118025..1121633)
Genome browser
AA seq
1202 aa
AA seq
DB search
MTRAVAADPDIAAFAEAAGRPDLTVTAVDGARPFLVSALADRAPVLVATATGREADDLTS
ELREMLGDGAVAQFPSWETLPHERLSPGADTVGRRLQVLRRLAHPEDAQYGEPLRAVVAT
VRSLVQPMAPGLGDAPSITLREGVEHDFDQLIETLVELAYTRVDMVGKRGEFAVRGGILD
VFPTTTDLPVRVEFWGDEITDLRAFSVADQRSQPEVEVGTVHVYPCRELLLTAEVRERAA
ALKAEHESDAALVEILEKLSQGIPVEGMEALIPALIPGELQLLTDVLPAGAHTLLLDPEK
IRTRAADLGRTGQEFLEASWTAAALGSAAPLDPSGMNLGASAYRSLDEVHDSVSAAGRPW
WTVSPLATGPDEGPDHLTVRAEHAPAPRGSEAEAEKLFATLRAHAASGGTGVIVVAGQGT
RARILERLRDAEVPATELDAGAAPKAGTVGVLRGSLQTGLTVPAEKLVLLAEPDLTGNRV
AGVGDGRRLPAKRRNQVDPLALTAGDLVVHDEHGIGKFVEMIERTVAGARREYLVIEYAP
GKRGQPGDKLFVPMESLDQLSRYVGGEMPALSKMGGSDWQNTKRKARKAVREIAGELVQL
YAARNAAPGHAFAPDSPWQREMEDAFPFTETVDQMTVIGDVKADMEKAVPMDRVVIGDVG
YGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLKTFEERMQGFPVTVKGLSRFTDKLE
TRAVLEGLADGSVDVVVGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKALRTNVDV
LTMSATPIPRTLEMSMAGIREMSTILTPPEERHPVLTYVGAYDDKQVAAAIRRELLRDGQ
VFYVHNRVSSIDRAAKHIRDMVPEARVVVAHGQMGEEALESTVQGFWNREFDVLVCTTIV
ETGLDISNANTLIVERAENLGLSQLHQLRGRVGRSRERGYAYFLYPSEKPLTETAYDRLA
TIAQNNDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAVEAYRAAAD
GKPITVPEEQKEVRIDLPVDAHIPPDYVTSDRLRLEAYRKLAAAHDDTAVAEVLTELTDR
YGPPPVEVERLAAIARLRSLARDAGVTEITVTGTNLRIAPMELLDSQQMRLKRLYPGGSY
RAATRTITFPLPRVGGGGVGSERVRDIEVLQAVADFLAAMAGKGAGYWRLDQPPRAVAAE
AP
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
ctgaccagggcggtcgccgcagatccggacatcgccgccttcgcggaggcagcgggcagg
cccgacctcaccgtcaccgcggtcgacggtgcgcgtccgttcctcgtctcggcgctcgcc
gaccgcgcgcccgtgctcgtcgccaccgccacgggacgcgaggccgacgacctgacctcc
gagctgcgggagatgctgggcgacggtgccgtggcccagttccccagctgggagacgctg
ccgcacgagcgcctctcccccggcgcggacaccgtcgggcggcggctgcaggtgctgcgc
cgcctggcccacccggaggacgcgcagtacggcgaacccctgcgggccgtcgtcgcgacg
gtccgctccctggtgcagccgatggcgcccgggctcggcgacgccccgtcgatcacgctg
cgcgagggcgtcgagcacgacttcgaccagctgatcgagaccctcgtggagctcgcctac
acgcgggtcgacatggtgggcaagcgcggcgaattcgccgtccgcggaggcatcctcgac
gtcttccccacgaccacggatctccccgtgcgcgtggagttctggggcgacgagatcacg
gacctccgtgccttctccgtggccgaccagcgctcgcagcccgaggtcgaggtcggcacc
gtgcacgtctacccctgccgcgagctactgctcaccgcggaggtccgcgagcgcgcggcg
gcgctgaaggcggaacacgagtccgacgccgccctggtggagatactggagaagctctcc
cagggcatcccggtggagggcatggaggcgctgatccccgcgctcatcccgggcgagctg
cagctgctcaccgacgtcctccccgcgggcgcgcacaccctgctcctcgaccccgagaag
atccgcacccgcgcagcggatctcggtcgcaccggccaggagttcctcgaggcctcgtgg
accgcggccgcgctcggctcggccgctccgctcgacccgtcggggatgaacctgggcgcc
agcgcctaccgctcgctcgacgaggtgcacgactccgtctccgccgccggacggccctgg
tggaccgtctccccgctggcgacgggtcccgacgagggaccggaccacctgacggtccgc
gccgaacacgcccccgcgccacggggttccgaggccgaagcggagaagctcttcgcgacg
ctgcgcgcccacgccgcgtccggcggcaccggcgtgatcgtggtcgccggccagggcacc
cgcgcccgcattctggagcggctgcgcgacgccgaggtcccggccaccgagctggacgcg
ggcgccgccccgaaggcgggcaccgtcggcgtgctgcgcggcagcctgcagacgggcctc
accgtgcccgccgagaagctcgtcctgctcgccgagcccgacctcacgggcaaccgcgtc
gcgggcgtcggcgacggccggcggcttccggccaagcgccgcaaccaggtcgacccgctg
gccctcaccgccggcgacctcgtggtgcacgacgagcacggcatcggcaagttcgtcgag
atgatcgagcgcaccgtggccggcgcccgccgcgagtacctggtgatcgagtacgcgccg
ggcaagcgggggcagccgggcgacaagctcttcgtcccgatggagtcgctggaccagctc
tcccgatacgtcggcggagagatgccggcgctgtcgaagatgggcggcagcgactggcag
aacaccaagcgcaaggcgcgcaaggccgtccgggagatcgcgggcgagctggtgcagctc
tacgcggcccgcaacgccgccccgggccacgccttcgcgcccgactccccgtggcaacgc
gagatggaggacgccttccccttcaccgagaccgtcgaccagatgacggtgatcggcgac
gtgaaggccgacatggagaaggccgttccgatggaccgcgtcgtgatcggcgacgtcggc
tacggcaagacggagatcgccgtgcgcgccgccttcaaggccgtgcaggacggcaagcag
gtcgcggtgctcgtgccgacgaccctgctcgcgcaacagcatctgaagaccttcgaggag
cggatgcagggcttcccggtcacggtgaagggcctgtcccgattcacggacaagctggag
acccgagcggtgctcgagggcctcgccgacggcagcgtcgacgtggtggtcggcacccac
cggctgctgcagaccggcgtgcggtggaaggacctcggcctcgtcgtggtcgacgaggag
cagcgcttcggcgtcgagcacaaggagcacatcaaggcgctgcgcaccaacgtcgacgtg
ctcaccatgagcgccaccccgatcccccgcacgctcgagatgagcatggccggcatccgc
gagatgtcgaccatcctcaccccgcccgaggagcgccacccggtgctcacctacgtgggc
gcgtacgacgacaagcaggtggccgcggccatccgccgcgagctgctgcgcgacggccag
gtcttctacgtgcacaaccgggtcagctcgatcgaccgggccgccaagcacatccgcgac
atggtgcccgaggcgcgggtcgtggtggcgcacgggcagatgggcgaggaggccctggag
agcacggtgcagggcttctggaaccgcgagttcgacgtgctggtgtgcaccaccatcgtc
gagaccggcctggacatctccaacgccaacaccctcatcgtggagcgcgccgagaacctc
ggcctgagccagctgcaccagttgcgcgggcgcgtgggtcgctcccgcgagcgcggctac
gcctacttcctctacccgtcggagaagccgctcaccgagaccgcctacgaccggctggcg
accatcgcgcagaacaacgacctcggcgccggcatggccgtggccatgaaggacctcgag
atccgcggcgccggcaacgttctcggcgccgagcagtccggccacgtcgccggcgtcggc
ttcgacctctacgtgcggctcgtcggagaggccgtcgaggcctaccgcgccgccgccgac
ggcaagccgatcaccgtgcccgaggagcagaaggaggtgcgcatcgacctcccggtggac
gcgcacatcccgcccgactacgtcaccagcgaccggctgcgcctggaggcgtaccgcaaa
ctggctgccgcgcacgacgatacggccgtcgccgaggtgctcaccgaactcaccgaccgg
tacggcccgcctccggtggaggtggagcgactcgcggcgatcgcgcggctgcgctcgctc
gcgcgggacgcgggcgtcaccgagatcaccgtgaccggcaccaatctgcgcatcgcgccg
atggaactgctggactcgcagcagatgcggctcaagcggctctaccccggcggctcctac
cgcgccgcgacccgcaccatcaccttcccgctcccccgggtcggcgggggcggcgtcggc
agcgaacgggtgcgcgacatcgaggtgctgcaggccgtcgccgacttcctggccgcgatg
gccggcaagggcgccggctactggcggctcgatcagccgccccgcgccgtcgcggcggag
gccccgtga
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