Candidatus Pseudothioglobus singularis: W908_07870
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Entry
W908_07870 CDS
T04071
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tsn
Candidatus Pseudothioglobus singularis
Pathway
tsn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tsn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
W908_07870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsn03400
]
W908_07870
Enzymes [BR:
tsn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
W908_07870
DNA repair and recombination proteins [BR:
tsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
W908_07870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ALE02440
UniProt:
A0A0M5KS30
LinkDB
All DBs
Position
1539515..1542946
Genome browser
AA seq
1143 aa
AA seq
DB search
MSIVYPQESGSFSSDLKKNYWGSLFGSSEALALIELAESNQCVVLYIARDIAHHDEIKKA
LLFFRTSIDILDFDSWEVLAFDHFSPHPDIISSRIHTLSKLLSIDSAIVVTTLETLSQRL
CPKEYINQYSLNLKTRQSLEIDSFVESLIKIGYRRVTTVMEPGEFSIKGALIDLYPMGAA
NPFRIDLFDNEIDSIRSFDPSTQRSIEVIEEIHLLPAREFASDSASINIFKENYLSEFGN
TDGFIYTEVSEGRYPGGIEFYLPLFFNGTNTLFDYIPNNSMIVYQKGLDELLENQSIELL
SRFNYCQSSLERLPLPINKVFVDSNDFFSSLNEKKLIQIQTSKIQQKTGLNFTSSILPPL
KIEAQAKNPLNKLIKFIEGFEGRVLIVCESDGRQSVLVDLLSSYKLNPTQCSDWIDFINH
SSKLCITSASLNEGVVFKKIAIISENNLFGKDAIKQRRRRRAKHKDFDEAIKSLVEIKLG
DPVVHEHYGVGRYLGLESRSFDENQQDFLSLEYANGSKLMVPITSLNLISRYSGVSSDHA
PLHKLGSQQWIKAKRKAAEALYDVAAELLEIYAKRQSQKGFSYPAPNDSYSSFVSSFKFE
ETPDQLKTMDDVLLDMQSDRPMDRLVCGDVGFGKTEIAMRAAFLAVESGKQVAILVPTTL
LANQHFQTFNDRFSKFPIVIKSLSRFQDAREQKQIKLNLKEGKIDIIIGTHKLIQGDIKY
QKLGLIIIDEEHRFGVKQKESLKKIRGQSDILTMTATPIPRSLNMALGSLKELSIIASPP
AKRTAIQTFVDQWNDNTIVEACSREIHRGGQIFVVHNDIDSIDNMAESLRVLMPNLKIRI
AHGQMPSKELEQIMTDFYHQRFQVLVCTTIIETGIDIPSANTIIINNAQNFGLAQLHQLR
GRVGRSHHKAYAYLVIKSHQSITENAKKRLDAIASLEELGAGFMLANHDLEIRGAGDLLG
ENQSGKISEIGFNLYHDLLKRTIHAIKNNKQLDIKEALTEEVEINPGIACIIPDTYLPDV
HERLILYKRIASANNEEELKDLKIEMIDRFGLLPDSTSNLFESSSLKNYSNDIGVLKINI
YDDKAEITLNEKNSIDASKIIGLIQTKPTQYQLKNQNTIVINESMEPDMSRIRKISKLLS
AIA
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgagtattgtctatccgcaagaatctgggtcattttcctctgacttaaaaaaaaattat
tggggatcattatttgggtcctcagaagctcttgcacttatagagcttgcagaatcaaat
caatgtgttgttctctatattgcgagagacattgcacatcatgatgaaattaaaaaagcg
cttttattttttagaacatctatagatatattagattttgatagctgggaagtgttagct
tttgatcacttctcacctcatcctgacattatttcatcaaggattcataccttatccaaa
ttattatctatcgacagtgcaattgttgttacaacacttgaaacgctctcccaaagattg
tgcccaaaggaatacattaatcagtacagcctaaatttaaagactcgacagagtcttgag
attgattcatttgttgaaagcttaattaaaattggatatagaagagtaacaactgtaatg
gagccaggagagttttccataaaaggcgcactgatagatctgtaccctatgggcgcagca
aatccattcagaattgacctttttgataatgagattgattctataaggtccttcgatcca
tccacccaaagatctatagaggtgattgaggaaattcaccttttgccagctagagaattt
gcttccgatagtgccagcattaatatattcaaggaaaactatctgtctgagtttggaaat
actgatggctttatatatacagaagtcagtgaaggaagataccctggaggaattgagttc
tatttgccattattctttaatggaacaaatactttgtttgattacattcctaataactca
atgattgtttatcaaaaagggcttgatgagttactagaaaatcagagtattgaattatta
tcaaggtttaattattgtcaaagttcactggaaagacttccccttccaatcaataaagtt
ttcgtggatagtaatgatttttttagttcactcaatgaaaaaaaactaatacaaatacag
acttcaaaaatacagcagaagacaggccttaattttacatcctcaatactcccacccctc
aaaattgaagctcaagcaaaaaacccacttaacaaattaatcaaatttattgagggtttt
gagggaagggtcttaattgtatgcgaatcggatggaagacagagcgttttagtagatttg
ttatcgtcatataaactgaatcccactcaatgttctgattggattgattttattaatcac
agctcaaaactctgtattacaagtgcaagtctcaacgaaggtgttgtatttaaaaaaata
gcaatcatttctgagaataatttattcggtaaggatgctattaagcaaaggcgtagacgg
cgagctaaacataaagattttgatgaagcgataaaaagtttagttgaaattaaacttgga
gatccagttgtacatgaacactatggagtggggcgatacctaggacttgaaagcagaagt
tttgatgaaaatcaacaagactttctctctctagagtatgcaaatggatcaaaattaatg
gttccaataaccagccttaatttgatctcaagatattctggtgtgagctctgatcacgca
cctcttcacaaacttggaagccagcaatggataaaagcaaaaagaaaagcagctgaagca
ctctatgatgtggcagccgagctactagaaatctatgctaagagacaatctcaaaaagga
ttttcttatccagctcccaatgactcttatagttcttttgtctcaagttttaaatttgaa
gaaacacctgatcagcttaaaacaatggatgatgttctacttgatatgcagtctgatagg
ccaatggatcgattagtttgtggtgatgtcggttttgggaaaactgaaattgcaatgagg
gcagcttttctagcagttgaatctggaaagcaagtagccattctagtacccacaacccta
ttagctaatcagcatttccaaacttttaatgatcgtttttcaaaatttcccattgttatt
aaatctttatctagattccaagatgcgagagaacaaaaacaaatcaagctgaatctaaag
gaaggaaaaattgatattattataggaactcataaactgatccaaggtgacattaaatat
caaaaattaggacttattattattgatgaagagcatcgatttggcgttaaacaaaaagaa
tcattaaaaaaaatccgtggtcaaagtgacatattaacaatgactgcaacccctatacca
cgctccttaaatatggccctaggatctttaaaggaactttcaattattgcctcacctcct
gcaaaaagaacagcaattcagacttttgtagatcagtggaatgacaatacaatagttgaa
gcatgctctagagagattcatagaggcggtcaaatctttgttgttcacaatgacatcgat
tctatagacaatatggctgagtcattaagagtgcttatgcccaatttaaagattcgaatt
gctcatggtcaaatgccaagcaaagaacttgaacaaataatgactgatttttatcatcag
cgctttcaagtcttagtatgcacaacaataatagagaccggaatagatatcccaagtgca
aacaccatcattataaataatgcgcaaaattttggtcttgctcagcttcaccaattaaga
ggaagagttggacgctcacatcacaaagcatatgcatatctcgtcataaaatctcatcaa
tctattactgaaaatgccaagaaacgtcttgatgcaattgcatcattagaggaactcggc
gctggctttatgttggccaatcatgatttagagataaggggtgcaggagatttattagga
gaaaatcaaagtgggaaaatttcagaaattggctttaatctttatcatgacttattaaaa
cgaacgattcatgccattaagaataataaacagctagatattaaagaagcacttactgaa
gaggttgagattaaccctggtatagcttgcattattccagatacctaccttccagatgtt
catgaacgattaatcctctataagagaattgctagtgcgaataatgaggaagaattgaaa
gatcttaagattgaaatgatagaccgttttggtcttcttccagactcaacaagtaacttg
ttcgaatcctcctcattaaaaaactactcaaatgatatcggtgttttgaaaattaatatt
tacgatgataaagctgaaattactttaaatgaaaagaatagtatcgacgcatccaaaatt
attggccttatccaaacgaaaccaacccagtatcaattaaaaaatcaaaatactatcgtt
attaatgaatctatggagcctgacatgtcaagaattagaaagataagcaagctactcagt
gcaatcgcttag
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