Terrihabitans soli: IZ6_27950
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Entry
IZ6_27950 CDS
T07468
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
tso
Terrihabitans soli
Pathway
tso03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IZ6_27950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tso03400
]
IZ6_27950
Enzymes [BR:
tso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IZ6_27950
DNA repair and recombination proteins [BR:
tso03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IZ6_27950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
BCJ92060
UniProt:
A0A6S6QYC3
LinkDB
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Position
complement(2709856..2712309)
Genome browser
AA seq
817 aa
AA seq
DB search
MPKLLDAYRKKRDFSKTPEPAPKAGKAKGFAFVVQKHDATRLHYDFRIELDGVMKSWAVT
RGPSLVPTDKRLAVQTEDHPIAYNSFEGIIPKDQYGGGTVMIWDRGTWQPEGDPHKGLKK
GHLEFSLHGEKLSGRWHLVRMKKKAREKAEPWLLIKSDDEAARTARDKDILKELDRSVVS
GRTIPEIAAKKERVWKSKRGDSVNSTEEKKPKTAKSKTAKKSEALIVHTGKKAKLPDFVE
PQLATLVAKARSGENWLHEVKFDGYRLQARLKNGKVKLLTRNGLDWSHRFPNICAGIKTL
PVGEALIDGEAVVEDETGASSFSALQQDLGGRGGKLVAGKAIYYAFDLLHLNEHDLRALP
LLERKTALQALVEHAPADKLRFSEHFATEGDAMLEHACRLGLEGIISKRADAPYKSGRND
NWLKVKCTQSSEFVIGGYVPSTVSAGMIGSLVMGYYEKGKLVYAGRVGTGYTQKIARNLK
KAMDKVKADASSFAEKLSADERRGVIWVKPKLVAEVEFRGWTQDGSLRHASFKGLREDKD
PKSAVREVPKDMPEPKAKAKMAQIKKGVAVAGVNLSHPERVLWDDEGVTKQGLAEFYAEI
ADWILPHLVDRPLSLVRCPSGASAKCFFQKHAWAGLGPGIREIDVPGDDEKMLAIKDISG
LISLVQAGVLEIHPWGSKQPKLTMPDRLIFDLDPGDGVAWSGVVAAARDVRERMNELGLE
SFVKTTGGKGLHVVVPLKPDVAWDEAKAFTKVFAEQMAGDSPELYVSTMSKKIRKGRVFV
DYLRNGQGATAVAAYSTRARPGAPVATPSTGRNWGPI
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
gtgccgaagctcctcgacgcctaccgcaagaagcgcgatttctcgaagacgcccgaaccc
gcccccaaagccgggaaggcgaaaggattcgctttcgttgtccaaaagcacgatgcgacg
cggcttcattacgatttccggatcgaactcgacggcgtgatgaagagctgggcggtgacg
cgcgggccgagccttgtgccgaccgacaagcggcttgccgtccagaccgaagaccacccc
atcgcctacaattccttcgagggcatcatccccaaggatcagtatggcggcggcacggtg
atgatctgggatcgcggcacgtggcagccggaaggcgatccgcacaaaggcctgaagaag
ggccatctggaattttcgctgcacggcgaaaaactatccggccgctggcatcttgtgcgc
atgaagaaaaaggcgcgggagaaggccgagccctggcttctgatcaaatccgacgacgaa
gcggcgcggacggcaagagacaaggacattctgaaagagctggaccgctccgtcgtctcc
ggccgcactatcccggaaattgcggcgaaaaaggaacgcgtctggaaatccaagcgcggc
gacagcgtgaattcgacggaggagaaaaagccgaaaaccgcaaaatcgaaaacggcgaaa
aaatccgaggccctcatcgtccataccgggaagaaggcaaagcttcccgactttgttgag
ccgcagttggcaacgctcgtcgccaaagcgcgctcgggcgaaaactggctgcacgaagtg
aagttcgacggctatcgcctgcaggcgcggctgaagaacggcaaggtgaaactcctcacg
cgcaacgggctcgactggtcgcacagattcccgaacatctgtgccggtatcaaaacgctt
cccgtcggcgaagcgctgatcgatggcgaagctgtggtcgaagacgagacgggcgcctca
agtttctcggccttgcagcaggatctcggcggacgcggcggcaagctcgtcgccggaaaa
gccatctactatgcttttgatcttctgcatcttaacgagcacgatctgagagcactgccg
ctgcttgaacgcaaaacggctctgcaggcgctcgttgaacatgcgccggcggataagctc
cgcttttccgaacatttcgcaaccgaaggcgatgcgatgctcgagcatgcctgccgtctc
ggacttgagggcattatctccaagcgtgccgacgcgccctataaatcaggacgtaacgac
aactggctgaaggtcaaatgcacgcaaagctcggaatttgtgatcggcggctatgtgccg
tcgaccgtctccgccggcatgatcggctcgctggtgatgggatactatgaaaagggcaaa
ctcgtttatgccggacgcgtcggcaccggctatacgcagaagatcgcgcgcaatctgaaa
aaggcgatggacaaggtgaaggccgatgcctcgtctttcgcggaaaagctgtcggcggac
gagcggcgcggcgtgatctgggtgaagcctaagctcgttgccgaagttgaatttcgcggc
tggacgcaggatgggtctttgcgccacgctagtttcaaaggcctgcgcgaggataaggat
ccgaaaagcgcggtgcgtgaggtgccgaaagacatgcccgagccgaaagccaaggcaaag
atggcgcagataaagaaaggcgtcgcggtcgcgggcgtcaatctcagtcaccccgagcgc
gtgctgtgggatgatgaaggtgtcaccaaacaagggcttgccgaattttacgccgagatc
gccgactggattttgccgcatcttgtcgaccgtccgctgtctctggtgcgctgcccgtcg
ggcgcgagcgcgaaatgctttttccagaaacatgcctgggccgggctcggaccgggcatt
cgcgaaatcgacgtgccgggcgatgacgagaaaatgctcgcgatcaaagatatcagcggg
ctgatctcgctggtgcaggcgggcgtgctcgaaattcatccctggggctcgaaacagccg
aaactgaccatgccggaccggctgattttcgatctcgatccgggagacggcgtcgcatgg
tccggcgtcgttgccgccgcgcgcgacgtgcgcgagcgcatgaacgaactcggtctcgaa
agctttgtgaaaacgaccggcggcaaggggctgcatgtcgtcgtgccgctgaagccggat
gtggcatgggacgaagcgaaagcgtttaccaaagtctttgccgagcagatggccggcgac
agccccgagctctatgtctccaccatgtcaaagaagatccgcaaaggacgggtctttgtc
gactatctcaggaacgggcagggggcgacggcggttgccgcctattcgacacgggcgcgg
ccgggcgcgccggtcgccaccccctcgactgggaggaattggggcccgatatga
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