KEGG   Terrihabitans soli: IZ6_27950
Entry
IZ6_27950         CDS       T07468                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
tso  Terrihabitans soli
Pathway
tso03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tso00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    IZ6_27950
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tso03400]
    IZ6_27950
Enzymes [BR:tso01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     IZ6_27950
DNA repair and recombination proteins [BR:tso03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     IZ6_27950
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase DNA_ligase_OB_2
Other DBs
NCBI-ProteinID: BCJ92060
UniProt: A0A6S6QYC3
LinkDB
Position
complement(2709856..2712309)
AA seq 817 aa
MPKLLDAYRKKRDFSKTPEPAPKAGKAKGFAFVVQKHDATRLHYDFRIELDGVMKSWAVT
RGPSLVPTDKRLAVQTEDHPIAYNSFEGIIPKDQYGGGTVMIWDRGTWQPEGDPHKGLKK
GHLEFSLHGEKLSGRWHLVRMKKKAREKAEPWLLIKSDDEAARTARDKDILKELDRSVVS
GRTIPEIAAKKERVWKSKRGDSVNSTEEKKPKTAKSKTAKKSEALIVHTGKKAKLPDFVE
PQLATLVAKARSGENWLHEVKFDGYRLQARLKNGKVKLLTRNGLDWSHRFPNICAGIKTL
PVGEALIDGEAVVEDETGASSFSALQQDLGGRGGKLVAGKAIYYAFDLLHLNEHDLRALP
LLERKTALQALVEHAPADKLRFSEHFATEGDAMLEHACRLGLEGIISKRADAPYKSGRND
NWLKVKCTQSSEFVIGGYVPSTVSAGMIGSLVMGYYEKGKLVYAGRVGTGYTQKIARNLK
KAMDKVKADASSFAEKLSADERRGVIWVKPKLVAEVEFRGWTQDGSLRHASFKGLREDKD
PKSAVREVPKDMPEPKAKAKMAQIKKGVAVAGVNLSHPERVLWDDEGVTKQGLAEFYAEI
ADWILPHLVDRPLSLVRCPSGASAKCFFQKHAWAGLGPGIREIDVPGDDEKMLAIKDISG
LISLVQAGVLEIHPWGSKQPKLTMPDRLIFDLDPGDGVAWSGVVAAARDVRERMNELGLE
SFVKTTGGKGLHVVVPLKPDVAWDEAKAFTKVFAEQMAGDSPELYVSTMSKKIRKGRVFV
DYLRNGQGATAVAAYSTRARPGAPVATPSTGRNWGPI
NT seq 2454 nt   +upstreamnt  +downstreamnt
gtgccgaagctcctcgacgcctaccgcaagaagcgcgatttctcgaagacgcccgaaccc
gcccccaaagccgggaaggcgaaaggattcgctttcgttgtccaaaagcacgatgcgacg
cggcttcattacgatttccggatcgaactcgacggcgtgatgaagagctgggcggtgacg
cgcgggccgagccttgtgccgaccgacaagcggcttgccgtccagaccgaagaccacccc
atcgcctacaattccttcgagggcatcatccccaaggatcagtatggcggcggcacggtg
atgatctgggatcgcggcacgtggcagccggaaggcgatccgcacaaaggcctgaagaag
ggccatctggaattttcgctgcacggcgaaaaactatccggccgctggcatcttgtgcgc
atgaagaaaaaggcgcgggagaaggccgagccctggcttctgatcaaatccgacgacgaa
gcggcgcggacggcaagagacaaggacattctgaaagagctggaccgctccgtcgtctcc
ggccgcactatcccggaaattgcggcgaaaaaggaacgcgtctggaaatccaagcgcggc
gacagcgtgaattcgacggaggagaaaaagccgaaaaccgcaaaatcgaaaacggcgaaa
aaatccgaggccctcatcgtccataccgggaagaaggcaaagcttcccgactttgttgag
ccgcagttggcaacgctcgtcgccaaagcgcgctcgggcgaaaactggctgcacgaagtg
aagttcgacggctatcgcctgcaggcgcggctgaagaacggcaaggtgaaactcctcacg
cgcaacgggctcgactggtcgcacagattcccgaacatctgtgccggtatcaaaacgctt
cccgtcggcgaagcgctgatcgatggcgaagctgtggtcgaagacgagacgggcgcctca
agtttctcggccttgcagcaggatctcggcggacgcggcggcaagctcgtcgccggaaaa
gccatctactatgcttttgatcttctgcatcttaacgagcacgatctgagagcactgccg
ctgcttgaacgcaaaacggctctgcaggcgctcgttgaacatgcgccggcggataagctc
cgcttttccgaacatttcgcaaccgaaggcgatgcgatgctcgagcatgcctgccgtctc
ggacttgagggcattatctccaagcgtgccgacgcgccctataaatcaggacgtaacgac
aactggctgaaggtcaaatgcacgcaaagctcggaatttgtgatcggcggctatgtgccg
tcgaccgtctccgccggcatgatcggctcgctggtgatgggatactatgaaaagggcaaa
ctcgtttatgccggacgcgtcggcaccggctatacgcagaagatcgcgcgcaatctgaaa
aaggcgatggacaaggtgaaggccgatgcctcgtctttcgcggaaaagctgtcggcggac
gagcggcgcggcgtgatctgggtgaagcctaagctcgttgccgaagttgaatttcgcggc
tggacgcaggatgggtctttgcgccacgctagtttcaaaggcctgcgcgaggataaggat
ccgaaaagcgcggtgcgtgaggtgccgaaagacatgcccgagccgaaagccaaggcaaag
atggcgcagataaagaaaggcgtcgcggtcgcgggcgtcaatctcagtcaccccgagcgc
gtgctgtgggatgatgaaggtgtcaccaaacaagggcttgccgaattttacgccgagatc
gccgactggattttgccgcatcttgtcgaccgtccgctgtctctggtgcgctgcccgtcg
ggcgcgagcgcgaaatgctttttccagaaacatgcctgggccgggctcggaccgggcatt
cgcgaaatcgacgtgccgggcgatgacgagaaaatgctcgcgatcaaagatatcagcggg
ctgatctcgctggtgcaggcgggcgtgctcgaaattcatccctggggctcgaaacagccg
aaactgaccatgccggaccggctgattttcgatctcgatccgggagacggcgtcgcatgg
tccggcgtcgttgccgccgcgcgcgacgtgcgcgagcgcatgaacgaactcggtctcgaa
agctttgtgaaaacgaccggcggcaaggggctgcatgtcgtcgtgccgctgaagccggat
gtggcatgggacgaagcgaaagcgtttaccaaagtctttgccgagcagatggccggcgac
agccccgagctctatgtctccaccatgtcaaagaagatccgcaaaggacgggtctttgtc
gactatctcaggaacgggcagggggcgacggcggttgccgcctattcgacacgggcgcgg
ccgggcgcgccggtcgccaccccctcgactgggaggaattggggcccgatatga

DBGET integrated database retrieval system