Trichinella spiralis: Tsp_08367
Help
Entry
Tsp_08367 CDS
T01609
Name
(RefSeq) putative PDZ domain protein
KO
K16175
protein scribble
Organism
tsp
Trichinella spiralis
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
PDZ
PDZ_6
PDZ_2
EB
Dickkopf_N
Motif
Other DBs
NCBI-GeneID:
10904096
NCBI-ProteinID:
XP_003375374
LinkDB
All DBs
Position
Unknown
AA seq
880 aa
AA seq
DB search
MSRALLSSFVLVVQLLIFVFSKRQKEEKASTSSHPPKSDSQCRMHDDCNARQVCVKKKCE
KAKPTGKECERHRDCGQCKKHNDCYGNKVCISGKCVDAEPMSKCRKDEECAQNSICKNGV
CFKLTKANYCSNHEQCSGRKLCDENSTCQDAALQSPLKLCDQDKECTETGVCKTGYCWIF
KKVVENAKQMFRICHQNVTCVCACVPLFNRHVELLDKRQCNLNHVPEEVVRYTRSLEVLL
LDSNHIKEISKHVFRLHKLRRLALSDNEIYKVPADISNLSELEDLDLSKNDIQEIPDSIK
QCRNLLYVDLSSNPINRLPECVFQLGRLTSLGLNDISMTNLPTDIGKLTNLEALEARENL
LRSLPASIEQLKNLKRLDIGSNEFETLPLEIGQLENLQELYVDCNDLECLPKVHSLIHCC
SFIYLFLQSLDVSENKILSFPDDLGELVSLSDLTASQNCVEVLPHSIGRLKKLTILKIDK
NRLVALTPAIGSCASLCELVLTENLLTELPSSLGNLKKLTVFNVDRNRLSELPSTIGSCS
NLTVLSLRNNLLSILPFEIGKLQQLRVLDVSGNRLRSLPYTLNALSNLQAIWLSDNQLYL
LGDTKGETVVENGFVGGPKVHFPDVDGDSVDEDDEAIGKFERHDTPHPKHPTKAKGRQID
GHVIPHDGNHKPGKDATFRVGDGRRKSAGEDSVEDGRTSVARSPTEKQPCSEVQSPASDD
DKRPAVPPPVPPRTIQQTWEKTVSFAQNEDNADEEVVQSRLKRKNTPHPLKSSVLDRNSG
EAQAKVAGYLISSRASSTEQRLSLTVRRTDQGLGLSIAGGLGSTPYKQDDNSIFISKIID
GGAADLAGLRVGDKLLSVNGRSVVNIEHKQAVEVMKLAGG
NT seq
2641 nt
NT seq
+upstream
nt +downstream
nt
atgtccagagcgttgttgtcgtcattcgtgcttgttgttcaattgctgatttttgtcttt
agcaaacgacaaaaagaagaaaaagccagtacaagcagtcatccgcctaaatcagacagc
caatgcagaatgcatgatgattgtaatgctagacaagtgtgcgtgaagaagaaatgtgaa
aaagcaaaaccaacaggaaaggaatgcgaaaggcacagagattgtggacaatgtaaaaag
cacaacgattgctatggaaataaagtgtgtataagtgggaaatgtgtcgatgctgagccg
atgagcaaatgtagaaaagatgaagagtgtgctcagaattcgatctgtaaaaatggagtt
tgtttcaaattgacaaaagcaaattattgttcaaatcatgaacaatgttctggaagaaaa
ttgtgcgatgaaaattccacttgccaagatgcagcactacaatcccctttgaaactctgc
gaccaggataaagaatgtactgaaacgggagtatgcaagactggctattgttggattttc
aaaaaagtcgtggaaaatgcaaaacaaatgtttcgcatttgtcatcaaaatgtcacttgt
gtgtgtgcctgcgtgccgctgttcaaccggcatgtggaattgctcgacaagcgtcagtgt
aatctgaaccacgtccctgaagaagttgtccgctacactcgaagtttggaagttctgctt
ctcgattcgaaccacatcaaagaaatttccaaacatgtttttcgattgcacaaactgcga
cgattggcactgagcgacaatgaaatttacaaagttcctgccgatatttccaatttgtcc
gaattggaagatttggatttgagcaaaaatgatattcaagaaattccggacagcataaag
caatgtcgaaatttactttacgtcgatttgagcagcaacccaataaacagacttccagag
tgtgtatttcaactgggccgtctgacatctctcggtttgaacgacatatcgatgaccaat
ttgccgacggacattggcaagctgaccaatttggaagctctggaagctagggaaaatctt
ttgcgttccttgccggcgtcgattgagcagttgaaaaatttgaaacgactcgacattggc
agcaacgaatttgaaactttgccattggaaattggtcagttggaaaatttgcaagaattg
tacgttgactgcaatgatttggaatgtttgcccaaagtacattcgttgattcactgttgc
tcatttatttatttgtttctccaatcgttggatgtatcagagaataaaattttgtcattt
ccggacgatctgggcgaattggtcagtttgtccgatttgaccgcttcacaaaattgcgtc
gaagtattgccccattcgatcggtcgtttgaaaaagttgaccattttgaaaattgacaaa
aatcgcctagtagccctgacgccggctattggcagttgtgcatcgctgtgcgaacttgtg
ttgacggaaaatttgctcaccgaattgcccagttctttgggaaatttgaaaaaattgacc
gtattcaatgtagatcgaaatcgtctatctgaactacccagtactattggaagttgttca
aacttgaccgttctttcattaagaaacaatttattgtccatattgcctttcgaaataggc
aaattgcaacaactgcgtgtacttgacgtatctggaaatcggttgcgttctttgccgtat
acattgaacgcgttgagcaatttgcaagcaatctggctgtcggataatcaattgtattta
ttaggggatactaaaggtgagactgttgtggaaaatggtttcgtcggcggtcccaaggtc
cacttcccggacgtggatggcgacagtgttgacgaggatgacgaagcgattggcaaattt
gaacgccacgacacccctcatcccaaacatccgaccaaagccaaaggtcgacaaatcgac
gggcacgtcataccgcatgacggaaatcataagccaggcaaagatgcgacgtttcgagtg
ggtgatgggcgcaggaaatcggccggcgaggatagcgtcgaagatggccgtacgtcagtt
gccagatcgcccactgaaaagcagccctgttccgaagttcagtctcctgcaagtgacgac
gataaacgaccagccgttccgcctcctgtcccaccgagaacgatacagcagacttgggaa
aagacggtaagctttgctcaaaacgaggacaacgcagacgaagaggtcgtacaaagtcga
ctgaagcgcaaaaacacgccacaccctttgaaaagcagcgtgttggacagaaattcagga
gaagcccaggcgaaagttgccggctatttgatttcatccagagcgtcgtcgaccgagcag
aggttgtcgttgactgttcgacgtaccgaccaaggtttgggtttgagcattgccggcggg
cttggttccacaccctacaagcaggacgacaattcaattttcatttccaaaatcatcgac
ggaggcgcggccgacttggccggcctgcgggtcggcgacaagctgttgtcggtcaacgga
cgctctgtggtcaacatcgagcacaagcaggcggtcgaagtgatgaaactcgccgggggc
g
DBGET
integrated database retrieval system
