Trichinella spiralis: Tsp_09994
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Entry
Tsp_09994 CDS
T01609
Name
(RefSeq) putative histone deacetylase family protein
Organism
tsp
Trichinella spiralis
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Thg1C
Thg1
PI3_PI4_kinase
Motif
Other DBs
NCBI-GeneID:
10908095
NCBI-ProteinID:
XP_003370783
LinkDB
All DBs
Position
Unknown
AA seq
2075 aa
AA seq
DB search
MSALYHIAQNDSPSLPVGSWSSDFHDFVDQCLIKDPALRFSTETCLLHPFISSARPTSIL
FDLIQRTKLLVRDLDHFQYRKLRKLMYLDEQQSGSSAEVSSLDSEDIDSVDDDLCAESAS
SRSDSYTSTQSLCGAMRSSITSEEILAWRRSRFATIRPTVTIAREQTEYAAENNMHEQMS
GYKRMRREHQKELKQLEEKFNSEMDNLKMKLDREYENLLLQFHKEMDKLHVTHRQELDKR
LKTNEELERKLRKAIVQQQEVEMKALQMQLKKEYKVNKERLKQELKMENSSKSFVEGNLK
TSKQNHLHVQAEAENRLIADHKFYLDFEIRKLKRRRLLHYHQLEQDLIREELGVRGRQLQ
SAHTLLRRHHELTRDLEMRQLNSLQNLRCQHLQKQHASELQNQQAYMKRVQDELRKKHAM
QVKQQPKELKQKELQIRRQFRQAVKTQTRQYKLLQLQLTQDLPKDEQREVVARLKDEQKR
KLALLAEQYEGSIGEMMEKQTVQLETWQEEEARQSKDKLNEELELLMAFQSKQRMQMDQH
HEREKGRLNEKVSLRLAVLENKMDDEVTQFERERQDRLNQLQTRQNQELDVFDQASIHLG
FSLIALGRIEGMPILKKEEVCVAFSVDYNKICDSFERLEKRSSIVFSLLQAYGLLDQVRL
FKPLIADESTVGVFHSDDYISFVKNASAGLIAEVEDVESEPMRDYGLGYDCPIFPALYEY
GRATVGATVHCAQLLVDGKAKLAVNVNGGWHHARRSAAAGFCYFNDCVIGILKLRERFKR
VLYIDLDAHHGDAVEDAFCSTRSVLTVSLHCYEAGFYPCSGSVDDVGVGSGKYYAVNVPF
RQGLVDEQLLSTFDALVPKIVHLYRPEVVFLQLGTDGLAGDPVAAFNLTPSAYAGVVCRV
LGFGKPCLLVGGGGYKPTNVSRCWALVLGALLGQNLDDDIPEHAFFSAYGPDFVLCNRHS
TGTIPNLNTDHQLNELHILETKKKNKNGTRRKNCLKLWLVMEPDDDDLIAWVDPDLLARE
KKITAIKKMLYASSGISNGLPSSTSSTRTTINDGRLSLADSVAQLRFGSSGDSGSNNENA
SSTAVERSRSLDSCLFVEFDPLNDEHCSSASANPAEVESGPDLVVEEPKKPTEGDNHAAC
GQQFFHLVDRCSNASLQARRLVDYSKSVIADLVDQSDIYRKLVVSRRRFDLVSPDTSLKV
TVHTPFDQTAPVLLFACHIRSSIGQIIGCVLCSFNSTRLLPIEQYAIKTSKIDESSLLST
LINNNNKNNINSTTGIGSLKRDDLQVVLNTIRQECEKLIDESAAVDAVLNGEMQSETAIR
KKYKNVKNAISCLVDAIEKFCINFCQSFEVNFSVELSPNFPTDSSTSCPFRPSDITDSEV
NFHFMIETVHSLPQKWTTEYSQFYLACHLIHGDRELCSAFKTNCGRSDRHFYEYLLFDAW
HSFERYQICHLLSGLGTQILATTTVPMVRKSNLRCLFPLQRTENAFSPYTTEHDTEHWQI
RSARLQCQTFARRYDRKSCFERVLRFERFECSSLAKCLLKFAVESRAFAFALFWFALILV
VVCFFEKIIYRFQGIGKSQSSSWLGFALPFVAKRVGDSRRPRYADRSTFASRTSQQKALL
VQLHLLDSWLLQTHVRVPLNPSVLAVGVFTENGKVYRSLTCPVKVSFRTVSSNFDIMYKS
GDDLRQDSLVLQMIHLMDHLWLKENLDLRMVVFRILPLQDKKGVIELVKNSKTLREIQVE
EGGMTGVLRDDLIQKWLQKQNPSELEYQIMYKMKVERENVKVPSFVYRSYDEFCEFAESI
YFRFPLIKMHSLPRGVTLRSNVRGVASDLVYTFFHPIFRDEQADIKSKTQNLHHPENVSG
EVKVQVEFRQGLLEIFINHAPGLKLMYAAAKTVMNNYKDIRIAYGHSDEFSFVFWKRTDL
WNRRLQKFVSTITSLFTSNYIFQWNFHFNDNRPLIWAPCFDGRVVLYPTDENLTDYLKWR
QADCHINNLYNTVFWKLVNEGQLKPAEAEKRLCGSTAADKNEILFSQFNTNYNNEPDIFR
KGTVLYRNVDGETVNTFHGSIIDDQFWQSNAHLLN
NT seq
6228 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccttgtatcacatagctcaaaatgattcgccatcattgccagttggcagttgg
tcgagcgattttcacgattttgttgaccaatgtttgattaaagatcctgctcttcgattt
tccacggaaacttgtctcttgcacccgttcatcagcagtgcgaggccgacgtcgatattg
ttcgatcttatacaacgaacgaagttgttggttcgcgatttggaccatttccaatatcga
aaactgcgcaaactgatgtatttggatgagcaacagtccggaagttcggcagaagtatcc
agcctggatagtgaagatattgacagcgtggatgatgatctgtgcgctgaaagtgccagc
agtcggtccgattcgtacacgtcgacgcagtcgctgtgcggcgcgatgcgcagcagcatc
accagtgaagaaattttggcatggcgtagatctagatttgctaccatccgcccgactgtt
accattgcacgtgaacaaacggaatatgcagctgaaaataatatgcacgagcaaatgtca
ggatacaagcgtatgcgtcgtgaacatcagaaagaattgaaacaattggaagagaagttc
aattctgaaatggataatttgaaaatgaaattggatcgcgaatacgaaaatttattgtta
caattccacaaagagatggacaaattgcatgtcactcatcgtcaagaattggacaaaaga
ctgaagactaatgaagaacttgaacggaagcttcgtaaggcgattgttcaacagcaagag
gttgaaatgaaggcgcttcagatgcagttgaaaaaagaatacaaagtcaacaaggaacgt
ttgaaacaagaactgaaaatggagaacagttcgaaaagtttcgtcgaaggaaatttgaaa
acttccaaacagaatcaccttcacgtgcaagctgaagcggaaaatcgtctaatagctgat
cataagttttacctcgattttgagatacgtaaattgaagagacgtcgtttgttgcattac
catcaactggagcaggatctcatacgtgaagaattgggtgtacgtggtcggcagttgcaa
agtgcgcatacgttgcttcgtcgtcatcacgaattgacgagagatttggaaatgcgacag
ttgaattcgttgcaaaatttgcgttgtcagcatttgcaaaagcagcacgcttcggaattg
caaaaccagcaagcgtacatgaaacgggtacaggacgagcttcgaaagaagcatgccatg
caggtgaaacaacagccgaaagaattgaagcaaaaagagctgcagatccgtcgccaattt
aggcaagcagtgaaaacgcaaactcgtcagtacaagctgcttcagttgcagttgactcaa
gatttgccaaaagatgaacaacgtgaagtggttgccaggttgaaagatgagcaaaaacga
aaattagcattgctagccgaacagtacgaaggatccatcggggaaatgatggaaaagcag
acggtccaactggaaacttggcaagaagaagaagcgagacaatcgaaggataaattgaat
gaagaattggaattgctcatggcttttcaaagcaaacagcgcatgcaaatggatcaacac
catgaacgagaaaaaggtcgattgaacgaaaaggtctctttgcgactcgctgttcttgag
aacaaaatggatgatgaggtgacacaatttgaacgtgaacgtcaggatcgactgaaccaa
ctgcaaactcgtcaaaatcaagagttggatgtgtttgatcaggccagcattcacttaggc
ttttcattgattgcactcggtagaatcgaaggaatgccaattttgaaaaaagaagaagtc
tgtgtggcattttctgttgattacaataagatttgtgattcgtttgaacgtctcgaaaag
cgatcatcgatcgtgttttcactgttgcaagcgtacggtctgttggaccaagtacgactt
ttcaagcctctaatcgctgacgaatccactgtgggggtttttcacagtgatgattacatc
agttttgtcaaaaatgcttcggctggtctaatagcggaagttgaagatgtcgaatcggag
ccgatgcgcgattatggactcggttatgattgtccaatatttcccgcgctttatgaatac
ggcagggcgacggttggcgccacggtccactgtgctcagttgcttgtcgacggcaaagcc
aagttggcggtgaacgtgaacggcggttggcatcacgcgcgcaggtctgcggccgcaggc
ttttgctacttcaacgattgcgttattggcatattgaaactacgcgaacgtttcaagcgt
gtgctttacatcgacttggacgctcaccacggcgatgcagtggaagacgcgttctgctcg
acgaggagcgttttgaccgtttcgttgcactgctacgaagcgggattttatccttgtagc
ggttcagtggacgacgtgggcgttggctcgggcaaatattacgcggtcaatgttccgttt
cgtcagggtctggtcgacgagcagttgttgtcgacgttcgatgccctggtaccgaaaatt
gtccacctctaccgtccggaagtggtcttcctccaattgggcacggacggtttggccggc
gatccggtggccgcgttcaacttgaccccttcggcttatgctggcgttgtttgtcgtgtg
ctaggcttcggcaagccgtgcttgttggtcggcggcggtggctacaagccgaccaacgta
tcccgctgctgggctcttgttttgggtgctttgttgggccaaaatttggacgacgacata
cccgagcacgctttcttttccgcctacggtccggattttgtcctctgcaaccgacattcc
actgggacgataccaaatttgaatactgaccaccagttgaatgaactgcatattttggaa
acgaagaagaaaaacaagaatggaacaagaaggaaaaattgtctcaagttgtggttagtg
atggagcctgatgatgatgatttgattgcttgggttgatccggatctgttggccagagag
aagaagatcacggccattaagaagatgctttacgcgtcgagtgggatctcgaatgggctg
ccttcgtcgacttcgtcgacaagaactacaattaacgatggtcggctgtcactggcggat
tctgtggcgcagcttcgttttgggagcagcggtgacagtggcagcaataatgaaaatgcc
agttcgactgctgtggaacggagtcgatcgttggacagttgtttgtttgtcgaattcgat
ccactgaacgatgagcattgttcttccgcgtcggcgaacccagccgaagtcgaatccggc
ccggatctggtggtggaagaaccgaaaaagccgaccgaaggggataatcatgctgcttgt
ggccaacagtttttccacttggtcgaccgttgttcgaatgcttctctgcaggctcgtcga
ctggtcgattattcgaaatcggtgatcgccgacctggtcgaccagtcggatatttaccgg
aagttggttgtcagtcgtcgtcggttcgatttggtatcgccggacacgagtttgaaagtc
accgtccacaccccgttcgaccagacggcgccggtgttgctgttcgcctgccacatacgg
tcgtcgattggtcaaataatcggctgtgtgctttgttctttcaactctactcggctgttg
ccgatcgagcagtacgcaatcaaaacttctaaaattgacgaatcgtcattgctgtcaacg
ttgattaataataataataagaataatatcaattcgacgactgggattggttcgttgaaa
agagatgatctgcaagttgtgctgaatacgatcaggcaagaatgtgaaaaattgatcgac
gaatcggcagcggttgatgctgttctcaacggtgaaatgcaatctgaaacggcaattcga
aaaaaatacaaaaatgtgaaaaatgcgatcagttgtcttgtcgatgcgatagagaaattt
tgcattaatttttgtcaatcgttcgaggtgaatttttcggtagaattgtcgccgaatttt
ccgaccgattcttcaacttcttgtccatttcgaccatcggatataaccgattcggaagtg
aatttccattttatgatcgaaacggttcacagtttgccgcaaaaatggacgaccgaatac
agtcaattttatttggcttgtcatttgattcacggcgacagagaattgtgcagcgcgttc
aagaccaactgcggtcgaagtgatcgtcacttttacgaatatttgttattcgatgcttgg
cattcttttgaacggtaccaaatttgtcaccttctatccgggctcggaactcaaatcctg
gctaccacaactgtcccaatggtccgaaagtccaatttgcgttgtctctttcccttacaa
cgaaccgaaaatgcgttttccccatatactaccgaacacgacactgaacattggcaaatt
cgatcagctcgattgcaatgtcaaacttttgctcgaagatatgatcgaaaatcgtgcttt
gaaagagttttacgattcgaacgcttcgaatgttcttctttggcaaaatgtttgctgaaa
tttgccgttgaaagtcgtgcatttgcgtttgctttattttggtttgcattaattcttgtt
gttgtttgtttcttcgaaaaaataatctaccgatttcagggaattggaaagtcacaaagc
tcatcctggttggggtttgcgttgccgtttgttgcaaaacgtgttggtgacagtcgtcgg
cccaggtatgccgacagaagtacgtttgcaagtcgaacttctcagcagaaagccttgttg
gttcagttgcacttgctcgactcttggcttttgcaaacccacgtccgagtgccgttgaat
cctagcgtcttggcggttggtgtatttaccgaaaatggcaaagtctaccgttcgttgact
tgtcccgtcaaagtgtcttttcgaactgtcagttcaaatttcgacatcatgtacaagtcg
ggcgatgatcttcggcaagattctctcgttttgcaaatgatccatttgatggatcatctt
tggttgaaagagaatctcgacttgcgtatggttgtttttcgcattctaccattgcaagat
aaaaagggtgtaattgaattggttaaaaattcgaaaacgttgcgtgagattcaagttgaa
gaagggggcatgactggcgttttacgagacgatttgattcaaaagtggttgcaaaagcaa
aatccgtccgaattggaatatcaaattatgtacaaaatgaaagtggaaagagaaaatgtc
aaagttccatcgtttgtttatcgttcgtatgatgaattttgcgaatttgctgaaagcatt
tattttcgttttccgttgatcaaaatgcacagcttgcctcgcggtgtgactcttcgaagt
aatgttcgcggtgtggcctccgatttggtgtacacattttttcatccaatttttcgagat
gaacaagcagatataaaaagcaaaactcaaaatttacatcatccagaaaatgtcagcgga
gaggtgaaagtccaagtggaattccgtcaaggccttttggaaatatttatcaaccacgcc
cctggcctgaaattgatgtacgctgcggccaagacggttatgaacaattacaaagatatt
cgaatcgcttatggtcatagtgacgaattcagctttgttttctggaagcgaaccgatctt
tggaatcgtcgtctgcagaaattcgtctcgaccatcaccagcttgttcacttccaattac
attttccaatggaatttccatttcaatgacaacagaccgctcatttgggcaccgtgtttc
gacggtcgtgtagtactgtatccgacggacgaaaatttgacagattatttgaaatggcgt
caagccgactgtcacattaacaatttgtacaatactgtattttggaaactggtcaacgaa
ggccaattgaagccggctgaagctgaaaagcgactgtgcggctctactgccgcggacaag
aatgaaattctattcagccaattcaacaccaattacaacaacgagccggatatttttcgc
aaaggcaccgtactgtatcgcaacgtcgacggcgaaacggtgaacacatttcacggaagt
attattgacgatcaattttggcaatcgaatgcccatctgttgaactaa
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