Trichinella spiralis: Tsp_10986
Help
Entry
Tsp_10986 CDS
T01609
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tsp
Trichinella spiralis
Pathway
tsp03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Tsp_10986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tsp03400
]
Tsp_10986
Enzymes [BR:
tsp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Tsp_10986
DNA repair and recombination proteins [BR:
tsp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
Tsp_10986
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
BRCT
DNA_ligase_IV
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
10903450
NCBI-ProteinID:
XP_003381011
LinkDB
All DBs
Position
Unknown
AA seq
700 aa
AA seq
DB search
MIFSGIDFTSSYGSTPFVGNLTQFIHGAFENHVRNCILDGEMIAWDRTAKRFVGKGEHVD
VKGLKFDSPLNPCYMVFDCLLLNDRPLAGLPLSERLKQLRSAVRDMPERMQIVDQQLVDS
ADQVIELLNETVGRGEEGIMPDYINGLVDDLDVLIVGGYFGTGRRSNLLSHFMIALMENY
DKKIIETVDVDEQEFQFVVSTTFADCDFSTPRFVALGRVGSGYSLKELYDFNAKLVQLRL
KRGQPPPWLKLGVEKPEVYIHPEQSTIVQVKAAQIVTSGQFPLGFTLRFPRVQAIRHDKT
WRDCMTVEQFLNFKDLSADCTSKRLAEMKNDNDDQIMNLKTVSKKPKRKAIVAADRRCRV
EAMKNLDQSKRMRKLKPISDIFQGRELCILNGNDTFTKENLEGKVVELGGTVVQHPVAGR
QTVKVKSVVRASTVDVLKLSWLIRCIQTNSFIQWTPKDMLLTTATMKRHFKRNFDQYGDS
YTDPVDSETLHDLLTTVPVEKTDVDDSKSQKFLSTISYKYGIFLNCTIYLDLYDDLLSPL
RRRIALSALDRYELLLYEFRANIVDTLTDSLTHTLCSAFVDFVQLQRLILLFSQSSIKLV
DLSRLDDLLRFKSDFNANFHIVTESWVTHCIGEFAIVDESLHSVRTSGESHPAIIDEEEV
EEGDDVINENPSSSLETLPLFFYSFTGNFSTEEEDEEQKL
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgattttcagcggaattgatttcacctcttcgtacggttctacgccgtttgtgggaaat
ttgacccaatttattcacggcgcgtttgaaaatcacgtgcgcaattgtattcttgacggt
gaaatgatcgcctgggatcgaacggccaaacgtttcgttggcaaaggtgaacacgtcgac
gtgaagggattgaaattcgactcgcctctcaacccctgctacatggttttcgactgtctg
ctgttgaacgatcgtccactggccggcctgccactcagtgaacgattgaaacagttgcgt
tcggccgtacgtgacatgcccgaacgtatgcaaattgtcgaccagcagctcgtcgattcc
gctgatcaagtgatcgagttgttgaacgaaacggtcggcagaggtgaagaaggtatcatg
ccagattatatcaacggtcttgtcgatgatttggacgttttgattgttggtggctatttt
ggcactggtcgacggtcgaatttgttatcccatttcatgattgcactgatggaaaattat
gataagaaaataattgaaactgttgacgttgacgagcaggaatttcaatttgtcgtttct
actacttttgcagattgcgatttttccacgccccgctttgtcgcactgggacgagtgggc
agcggctattcgttgaaagaattgtacgatttcaacgctaaacttgtccaattgcgtttg
aagcgtggccagccgccgccttggctaaaacttggcgttgaaaagcctgaagtttacatc
catcctgaacaatcgacaatcgtacaagtgaaagctgcacaaattgtaaccagtggccaa
tttccgttgggcttcacgttacgttttccaagagtgcaagcaattcgccacgacaaaacg
tggcgtgattgcatgactgtggaacaatttttgaatttcaaagatttgtcagccgactgc
acgtcgaaacgtttggccgaaatgaaaaatgataatgatgatcaaattatgaatttgaaa
actgtttccaaaaagcccaaacgcaaagcgatcgtcgcagccgatcgacgttgtcgtgtt
gaggcgatgaaaaatttggaccagtcgaaacggatgcgtaaattgaaacccatttccgac
atattccaagggcgtgaattgtgcattttgaacggcaatgacactttcaccaaagaaaat
ttggaaggcaaagttgtcgaactcggcggtacagtagtccaacatcctgttgccggtcgt
cagacggtgaaagtgaaatctgtagtgcgtgcttccactgtggatgttctgaaattgagt
tggcttattcgatgtatccaaacgaattctttcatacaatggaccccgaaagatatgtta
cttacgacggctacaatgaaacgacatttcaaacgaaactttgatcaatacggtgacagt
tatactgatcctgtggattcggaaactcttcatgatctactgacaacagtaccagttgag
aaaaccgacgttgacgattcgaaaagtcaaaaatttttatcaacaatatcatacaaatat
ggaatatttttgaactgcaccatttatttagatttatacgatgatttgctttcaccgttg
cgacggagaatcgcgttgagtgctttggatcgatacgagcttcttctttacgaattcagg
gccaacattgtcgacacgcttacagattcacttactcacacactgtgttcggcatttgtt
gactttgttcaattacaacgactgattttattattcagtcagtcatcaatcaaattggtt
gatttgagtcgattggatgatttgttgcgtttcaaatcggatttcaatgccaactttcac
attgttaccgaaagttgggtaacgcattgcattggagaatttgcaattgttgacgaaagc
ttacactcagttcgcacttcgggcgaatctcatcccgctattattgacgaagaagaagtt
gaagaaggtgatgatgtaatcaatgaaaatccatcatcatccttagaaacgttgcctctt
tttttttactctttcacgggcaatttcagcacagaagaagaagacgaagaacagaaatta
tga
DBGET
integrated database retrieval system
