Thamnophis sirtalis (common garter snake): 106539086
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Entry
106539086 CDS
T06107
Symbol
ARID1B
Name
(RefSeq) AT-rich interactive domain-containing protein 1B isoform X1
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
tsr
Thamnophis sirtalis (common garter snake)
Pathway
tsr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tsr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
106539086 (ARID1B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tsr03000
]
106539086 (ARID1B)
03021 Transcription machinery [BR:
tsr03021
]
106539086 (ARID1B)
03036 Chromosome and associated proteins [BR:
tsr03036
]
106539086 (ARID1B)
Transcription factors [BR:
tsr03000
]
Eukaryotic type
Helix-turn-helix
ARID
106539086 (ARID1B)
Transcription machinery [BR:
tsr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
106539086 (ARID1B)
Chromosome and associated proteins [BR:
tsr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
106539086 (ARID1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
DUF6554
Motif
Other DBs
NCBI-GeneID:
106539086
NCBI-ProteinID:
XP_013909242
UniProt:
A0A6I9X5Y7
LinkDB
All DBs
Position
Unknown
AA seq
1214 aa
AA seq
DB search
MEERGTPVAGLPAVGKKPLDLFRLYICVKEIGGLAQVNKNKKWRELATNLNVGTSSSAAS
SLKKQYIQYLFAFECKIERGEEPPPEVFSTGDTKKQAKIQPPSPANSGSLQGPQTPQSTG
SNSMTEVPSDLKPPTPASTPHGQMTPTQSSRNSSVSVHDPFSDISDSTYPKRNSMTPNAP
YQQSMNMPDMMGRMPYEPNKDPFGGMRKVPGNSEPFMAPGQMPNSGMQDMYSQSPAGTIS
NMGIGQRQQFPYGSGYDRRLDHGLGPEGSMGAPGQSNMVPSNSDPSMYSPNCYPGQQRHE
PYGPQYPMQAPPSGQPTYGGHQSGMFPQQQNYKRHMDGMYGPPAKRHDGDMFNMQYSNQQ
QEMFNQYSSAYSGPDRRPIQGQYPYPYNRERMQAPGQMQQHGIPPQMIGGPMQSSASSES
PQQNMWPTRNDMSYPYQNRQGPGGPAQAPPYPGMNRTDDMMVPDQRINHESQWPSHVNQR
QPSYMSSSASMQPITRPPQSSYQTPPSMPNHISRAPSPASFPRSHENRMSPSKSPFLSSM
KMPKVMPTLPGSQVTGPPTQPLPSIRREVTFPPGSVEASQPVLKPRRKITSKDIVSPEAW
RVMMSLKSGLLAESTWALDTINILLYDDSTVATFNLSQLSGFLELLVEYFRKCLIDIFGI
LMEYEVGHPGPKLQDHNSSPNEDGQSATEDVKKEEENNGECIDYFDDLEDEEEEEEEDEA
ESTEEGKSTLVAPPGAILDPSERPKQASKFDKLPIKIVKKNNLFVVDRSDRLGHVQEFNS
GLLHWQLGGGDTTEHIQTHFESKMEIPPCRRPSLSVSSGKKKNIEGKGESEEQQDKSISA
TIDDVLSARPGALSEDPDSNSQTDSNKFPFGIHQVKSHRNIKLLEDEPRSRDETPLCTIT
HWQDSLAKRCICVSNIVRSLSFVPGNDVEMSKHAGLVLILGKLILLHHEHPERKRTPQTY
EKEEEVDKGVACSKDEWWWDCLEVLRDNTLVTLANISGQLDLSAYTESICLPILDGLLHW
MVCPSAEAQDPFPTVGPNSILSPQRLVLETLCKLSIQDNNVDLILATPPFSRQEKLYATL
VRYVGERKNPVCREMSMALLSNLARGDTLVARAIAVQKGSIGNLISFLEDGVTMAQYQQS
QHNLMHMQPPPLEPPSVDMMCRAAKALLAMARVEENRSEFLLHEGRLLDISISAVLNSMV
ASVICDVLFQIGQL
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaggggaacccctgtagctggtctccctgctgttggcaagaagccactggat
ctttttagactctatatttgtgttaaggagattggtgggttagcccaggttaataaaaat
aagaagtggcgtgagctggctaccaacctaaacgttggcacttcaagcagtgcagccagt
tccttgaaaaaacaatatattcaatacctctttgcctttgaatgcaagattgaacgaggg
gaggaaccccctccagaagtcttcagcactggagatactaagaaacaagctaagattcag
ccgccatctcctgctaactcgggttctctccagggtccacagacccctcagtctacaggg
agcaattctatgacagaagtgccaagtgacctcaagcctccaacaccagcgtccacacct
catggacagatgacacctacacagagcagcagaaatagttcagtcagtgtacatgatccc
ttttcggatataagtgattccacatacccaaagcggaactctatgactccaaatgcaccc
tatcagcaatcaatgaatatgccagatatgatgggaaggatgccctatgagccaaacaag
gatccttttggtgggatgagaaaagtgcctggaaatagtgaacccttcatggcccctgga
caaatgcccaacagtggcatgcaggatatgtacagccagagtcccgctggaaccatttcc
aacatgggcataggccaacgccaacagtttccctatggaagtggttatgaccggaggttg
gatcatgggctgggtcctgaaggcagtatgggagcacctggtcaaagcaacatggtgcct
tcaaacagtgacccaagcatgtactctcctaactgttatcctgggcaacaaaggcatgaa
ccgtatggaccgcagtatccaatgcaagctcctccttctggacaacccacctatggagga
caccaatctggaatgtttccacagcagcagaactacaaacgtcatatggatggcatgtat
gggcctccagcaaaacgacatgatggagatatgtttaacatgcaatatagcaaccaacag
caggagatgtttaaccagtacagcagtgcttactctggaccagacaggagacccatccag
ggacagtatccatatccttataacagagagaggatgcaggctcctggacaaatgcaacaa
catggaatacctccacagatgattggtggcccaatgcagtcatcagcttccagtgaaagc
ccccaacaaaacatgtggcccacaagaaatgatatgtcttacccatatcagaacaggcaa
ggccccggaggccctgcacaggccccaccttatccagggatgaatcgtactgatgatatg
atggtacctgaccagagaataaaccatgaaagccagtggccttctcatgtcaaccagcga
cagccttcttacatgtcatcctctgcttccatgcagcctattactcgacctcctcagtca
tcctatcagacgccaccatcaatgccaaaccacatatctcgagctcctagccctgcatct
ttcccacgctctcatgaaaatcgtatgtctcccagtaaatctccattcctatcctctatg
aagatgccaaaagttatgcccactcttccaggctcgcaggtcacaggtcctccaacacaa
ccactaccatctattaggcgggaagtcacttttcctccaggttcggtagaagcatcccaa
ccagttttaaaaccaaggcgaaagattacctcaaaagatatcgtgagtccggaagcctgg
cgagtgatgatgtctcttaaatcaggccttcttgcagaaagtacttgggcattagatact
attaacattcttctgtatgatgatagtacggttgctactttcaatctctcacagttatct
ggttttcttgagctgttggtggaatattttagaaaatgcctgattgatatttttgggatc
cttatggaatatgaagtgggacatccaggaccaaaactgcaagatcataattcatctccg
aatgaggatgggcagtctgcaacagaggatgtcaagaaagaggaagaaaacaatggtgaa
tgtattgattactttgatgacctggaagatgaggaggaggaagaggaagaagatgaagct
gagagcacagaggaaggaaagagcactcttgttgctccacctggtgccattcttgatcca
agtgagaggccaaaacaagccagtaagtttgacaagttgccaataaaaattgtaaagaaa
aacaacttatttgttgttgaccgatctgataggttggggcacgttcaggaattcaacagt
gggcttcttcattggcaacttggtgggggtgatacaactgaacatattcagacccacttt
gagagtaagatggagattcctccttgcaggcggccatctctatcagtctcctcaggtaaa
aagaagaatatagaggggaaaggagaatctgaggaacagcaagacaaaagcatatcagcc
actattgatgatgtcttgtcagctcgtccaggagcattgtctgaagaccccgactctaat
tctcagacagatagtaataaatttccatttgggatccatcaagtgaaaagtcatcgaaat
atcaaactgctggaagatgagccacggagtcgagatgagactcctctatgtaccattacc
cattggcaagattctttggccaagcgttgcatctgtgtgtcaaatattgtccgtagctta
tcttttgtgcctggcaatgatgtggaaatgtctaaacatgcaggcttggtgctaatcttg
ggaaagttgattcttcttcatcatgagcacccagaaagaaagcgtacaccacagacatat
gaaaaagaggaagaagtggacaaaggggtggcctgcagcaaggatgagtggtggtgggac
tgccttgaagtcttgagggataatacattggtcacactagccaacatttctgggcagcta
gacttatctgcttatacagaaagcatctgtttgccaattttggatggcttactgcactgg
atggtgtgcccctcggcagaggcacaagatccttttccaactgtggggcccaactcaatc
ctttcgcctcagagacttgtactggaaaccctgtgtaaactcagtatccaagacaataat
gtggaccttatattggccacgcccccattcagtcgtcaggagaaactgtatgctacttta
gttaggtacgttggggaacgcaaaaatcctgtctgccgagaaatgtcaatggcgctctta
tcaaacctcgcccgaggggacacgttagtggcaagggcaatagctgtgcagaagggaagc
attggaaacttgataagcttccttgaggatggggtcaccatggcccagtaccagcagagc
cagcataaccttatgcacatgcagcctccgcctttggagccacctagcgtggacatgatg
tgcagggcagccaaggccttgttggccatggcccgggtagaggaaaaccgctctgaattc
cttttacatgagggccgcttgttggatatctcaatatcagctgtcctgaactctatggtt
gcatctgtcatctgtgatgtactctttcagatagggcagttatga
DBGET
integrated database retrieval system
