Telopea speciosissima (New South Wales waratah): 122639741
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Entry
122639741 CDS
T07910
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03022
Basal transcription factors
tss03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
122639741
09124 Replication and repair
03420 Nucleotide excision repair
122639741
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tss03021
]
122639741
03400 DNA repair and recombination proteins [BR:
tss03400
]
122639741
Transcription machinery [BR:
tss03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
122639741
DNA repair and recombination proteins [BR:
tss03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
122639741
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
122639741
NCBI-ProteinID:
XP_043688604
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Position
9:complement(13076588..13093801)
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AA seq
451 aa
AA seq
DB search
MPQVKIIAKNFMDMVAALPALKLDKLYDNGFICEAVLRSLPPLAKKYVLQMLYVDIPITA
KSMEEWVLAEGLSKHKNAIDRLIQLRVFLETDRKKEMSYILNPKFQSNVQKYLIYGGVSP
REPMPSSVTVRLPSLEELEAYALEQWECFLLQLISPSQAGKTTNFSSSVMKVFQRGLISQ
REKEAPRLTENGFQFLLMDTNAQLWYIIREYISSSEDRGVDPADLISFLLELSFHVAGEA
YNLNTLTDVQRNTFRDLADLGLVKLQQGRKEGWFIPTKLATNLSVSLSDSSSRKQGFIVV
ETNFRMYAYSSSKLHCEILRLFSRVEYQLPNLIVAAITKESLYSAFQNGITSEQIISFLQ
QNAHPRVAERTPTVPENVTDQIRLWETDLNRVEMTPAHLYDEFPSKEVFEAACDYARDNG
GLLWEDHKRMRVVVKGEIHMQMREYLRRQKQ
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgccgcaggtgaagatcattgcgaagaatttcatggacatggttgccgctttacctgcg
ttgaagctcgacaagctatacgataacggtttcatttgcgaagctgttctcaggtctttg
ccacctcttgccaagaagtatgttttgcaaatgttgtacgtcgatatcccaataactgca
aagtcaatggaggagtgggtgcttgctgaagggctctccaagcataaaaatgcgatagat
cggttaattcaattgagagtatttcttgagactgacaggaaaaaagagatgagttacata
ttaaatccgaagtttcagagtaatgttcaaaagtatttaatatatggtggtgtttcacct
agggaacccatgccttcaagtgtcactgtgaggctcccaagtttggaggaactagaggct
tatgcacttgagcaatgggagtgcttcttgctgcaacttattagcccatcccaagctgga
aagacaacaaacttcagctcttctgtgatgaaagttttccagcgaggtcttataagtcag
agagagaaagaagctccaaggttgaccgagaatggcttccagttcttactgatggataca
aatgcacaactttggtacataatcagggaatacatctccagttctgaggatagaggtgtt
gatcctgcagatttgatttcatttctgttggagcttagcttccatgtcgcaggggaggcc
tataatttaaacaccttgactgatgtacaaagaaacacttttagggatcttgcagacttg
gggctagtcaaacttcagcagggacggaaagagggttggttcattcctactaaattagcg
acaaatctttctgttagcttgtcagattcatcatcacgcaaacagggattcatagttgtg
gagacaaactttaggatgtatgcttattcatcttctaagttgcattgtgagattttgcgc
cttttctcaagggttgagtatcaacttccaaatcttatagttgcagcaataacaaaagaa
agcttgtacagtgcatttcaaaatggcattacatctgagcagataatttctttccttcag
cagaatgcacatcctcgtgttgcagagagaactccaactgtaccagagaatgttacagat
cagattaggctatgggaaaccgacctgaacagagttgagatgactcctgcacatctctat
gatgaattcccctccaaagaggtttttgaagccgcttgtgattatgcaagagataatggt
ggattgttatgggaagatcataaaagaatgcgtgtagttgtcaagggagagatacacatg
cagatgcgggagtatctccgccgccaaaagcaatag
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