Telopea speciosissima (New South Wales waratah): 122642075
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Entry
122642075 CDS
T07910
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
122642075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tss03021
]
122642075
03019 Messenger RNA biogenesis [BR:
tss03019
]
122642075
Transcription machinery [BR:
tss03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
122642075
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
122642075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
122642075
NCBI-ProteinID:
XP_043691424
LinkDB
All DBs
Position
10:40305436..40351875
Genome browser
AA seq
1128 aa
AA seq
DB search
MKNRSHRFLTNQAMEKERFVPSRENPRDLGFLPERGTGTNSNINNIKGMPNDIIQKPLPP
ILDRFRALLREREEELRVSDDDDVPALSAEEIVRLYEVVLSELTFNSKPLITELTIIAGD
QREYGEGIAAAICARILEAPVDQKLPSLYLLDSIVKNIGREYARYFASHLPEVFCEAYRQ
VHSNLHPPMRHLFGTWSAVFPPSVLRKIEAELKFSSSVNHPSSGLTVMKSSESPFARPTH
GIHVNPKYLEARHQFEHSTVMHETNCSHNAVHMTAFGGERLERSTSTSPTGWCGGSPKFH
DVQHARGGSSSLQTYGQKSAIGYNEYDIDNSDVLGAPKLGSPVGSARESSVSGVERPHPS
KTRLIRPSSPSRIGLPRSSSPPADGFRTDNSPGRVVERDSPSRSGFDSRLGRAIDGDGDG
GGDGERTDWWKFWSNDNHQHVENSSANLSNGSDRQRPRALIDAYGNCKGKKGQTEKPIKV
DRLDVNGINSETATRWQNTDEEEFVWEDMSPTLADRRSNDPIAPNPPLDRFNGRASLGRS
GAASLEHDFRKGNWPSQSQLAMDDTTEDGVSILGFRHGSMIKNSPSGPGTQNETTHVPSS
HYTQEPWILPHHYPQSSQQNLDLNKRARTGQLSYPAGGMAISAGQKLARQIENFPDSDAQ
HQRFSSDGSRIGSSSPNSLIVEPVSPMMPMLTLEKYLGLGPHSSPLAQLPWPPVNVHRSQ
PLPLPPILSQQKQIRSPFYTMDVNKPIMNQVPSKSSVLHGQRLDASERKAQSSSKLMPLP
NQQIGLISLNQRNQGQAAHLQRQLFQSKDAQENYIPFAAPEFSSHLMARSLNQGHIPQGH
GPIMNSILSNPTSGFRPSSVTLPSISNNSFHLQGGALPPLPPGPPPASSQMGTLPQNLGP
ISTQPPTGSAFSGLISSLMAQGLISMTSSASIEDSVGVDFNPDLLKVRYESAIKALYADL
PRQCTACGLRFKCQEEHSSHMDWHVTRNRISKNRKQKPSRKWFVSTSVWLSGAEAVGTDA
VPGFLPTEVVAEKRDDEEMAVPADENQNVCALCGEPFDDFYSDETEEWMYKGAVYLNAPD
GLTAGIDISQLGPIVHAKCRSESTVAAPEDFVLDEGGDKGNQRKKMRS
NT seq
3387 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacagaagccatagattcttgaccaatcaagccatggaaaaagagagattcgtc
ccctccagagagaaccctagagatttagggtttctaccagaacgtgggacgggcaccaac
agcaatatcaacaacatcaaaggcatgcccaatgacattatccagaagcctcttccccca
attctcgatcggtttagggctcttttgagggagagggaagaggagttgagggtatccgac
gatgatgatgttccggcgctgagcgctgaagagattgttcgactttacgaagtcgtttta
tcagagcttactttcaattccaagcctcttataaccgagctaacgataatcgccggagat
cagagggagtacggcgagggaattgctgctgcaatttgcgcccggattctcgaggcgcct
gtcgaccaaaagttgccttctttgtatcttcttgatagtattgttaagaacattggccgt
gaatatgcgaggtattttgcttcccatctccctgaggtcttctgtgaggcgtacaggcaa
gttcactctaacctgcatccacccatgcgtcacctctttggcacctggtcagcagtgttc
ccaccttcagtgcttcgcaaaattgaggcagaactaaaattttcttcttctgtaaaccat
ccgtcatctggcttgacggttatgaaatcatctgaatctccatttgctcgaccaactcat
ggaatacatgtgaatccaaagtatttggaggcaagacatcaatttgaacattcaactgtg
atgcatgaaacaaattgcagtcataatgctgtacatatgacagcctttggaggagaaaga
ctggagagaagtacttcaacaagcccaacaggatggtgtggaggttctccaaaattccat
gatgttcaacatgctagggggggttcatcaagtttacagacttatggtcagaaatctgcc
attgggtataatgaatatgatattgataattctgatgtcttgggagccccaaaactagga
tcacctgtgggttctgcccgtgaatcatctgtcagtggagtagaaagaccacacccttca
aaaactagacttataaggccctcttctccttcaagaatagggctccctaggtcttcatca
ccaccagctgatgggttcagaactgataattctccaggaagggttgttgaaagggactct
ccatctcgttctggatttgattccaggcttggcagagcaattgatggtgatggtgatggg
ggtggggatggggagaggactgactggtggaaattctggtccaatgacaaccatcagcat
gtggaaaattctagtgcaaacctcagtaatggatctgatcggcaaaggccaagagctctg
attgatgcttatggaaattgcaaaggtaaaaaggggcagacagagaagcctataaaggtt
gaccggctggatgtgaatggcattaatagtgagacagctacaagatggcagaatactgac
gaagaagagtttgtttgggaagatatgagcccgactttagcagaccgtaggagtaatgat
ccgatagcaccgaatcctcctcttgatcgcttcaatggaagagctagtttgggaagatca
ggtgctgcaagtttggaacacgatttcagaaagggtaattggcctagtcagagtcagctt
gcaatggatgacactactgaagatggggtttccatccttggttttagacatggatctatg
attaagaattctccgagtggtccaggaactcaaaatgaaaccactcacgttccaagttct
cactatactcaggaaccttggattttaccacatcactaccctcagtcctcacaacagaac
ctggacctcaacaaaagagcaagaactggtcagctgtcctatccagcaggtggaatggct
atatcagctggtcagaaactggctcgtcagattgaaaattttccagatagtgatgcacaa
catcaaagattctctagtgatggatcgagaattggttcttcaagcccaaattctttgatt
gttgagcctgtgtcacctatgatgccaatgttgacgctggagaagtatctgggactagga
cctcactcatctcccttggctcaacttccttggcctccagttaatgtgcatagatctcaa
ccacttcctttgccccccattctttcacaacagaaacaaattagaagtccattttacaca
atggatgttaacaagccaattatgaatcaggttccaagtaaatcttctgtgttgcatgga
cagcggttggatgcttctgaaaggaaagctcagagttcaagtaagctgatgccattgcct
aatcaacagattgggctgatttcattgaatcagagaaaccagggacaagctgcccatcta
cagagacaattatttcagtctaaggatgcacaagaaaattacattccctttgctgctcct
gagttctcatctcatttaatggcacgatctttgaatcagggacacattccacaagggcat
ggacctattatgaattcaattttgtccaatccaacatctgggtttcgtccctcctctgta
actctacctagtatatccaacaactccttccacttgcagggtggagccttgcctccttta
cctcccggcccccctcctgcctcatcacaaatgggaaccttgccacaaaatttgggcccc
atttcaacgcagccgccgactggaagtgcattttctggtctcataagttctcttatggct
caggggttgatttcaatgacatcatcagcttcaatagaggattctgttggggttgacttc
aacccggatcttctcaaggtccggtatgaatctgcaataaaggctttatatgctgatctt
ccaagacagtgcacagcatgtggtttacgtttcaaatgccaagaggaacacagtagtcac
atggattggcatgtgaccaggaatcggatatctaagaaccgtaagcagaaaccctctcgc
aagtggtttgtgagtactagtgtgtggctcagtggtgcagaggcagtgggaactgatgca
gttcctgggtttttgcccactgaagtggttgcagaaaaaagggatgatgaagaaatggct
gttcctgccgatgagaatcagaatgtgtgtgcattatgtggagagccttttgatgatttt
tacagcgatgagactgaggaatggatgtataaaggagccgtctatttgaatgcacctgat
ggattaacagcaggtatagatatatctcagctgggtcctattgttcatgcgaagtgcaga
tcagagtctacagtagctgctcctgaagattttgtactagatgaagggggtgacaagggt
aatcaaagaaaaaagatgcggagttag
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integrated database retrieval system
