KEGG   Telopea speciosissima (New South Wales waratah): 122655930
Entry
122655930         CDS       T07910                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tss  Telopea speciosissima (New South Wales waratah)
Pathway
tss03030  DNA replication
tss03410  Base excision repair
tss03420  Nucleotide excision repair
tss03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tss00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    122655930
   03410 Base excision repair
    122655930
   03420 Nucleotide excision repair
    122655930
   03430 Mismatch repair
    122655930
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tss03032]
    122655930
   03400 DNA repair and recombination proteins [BR:tss03400]
    122655930
Enzymes [BR:tss01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     122655930
    6.5.1.6  DNA ligase (ATP or NAD+)
     122655930
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     122655930
DNA replication proteins [BR:tss03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    122655930
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     122655930
DNA repair and recombination proteins [BR:tss03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     122655930
   NER (nucleotide excision repair)
    Other NER factors
     122655930
   MMR (mismatch excision repair)
    Other MMR factors
     122655930
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase HTH_36
Other DBs
NCBI-GeneID: 122655930
NCBI-ProteinID: XP_043706255
LinkDB
Position
3:complement(34118619..34178091)
AA seq 661 aa
MKDRSLSLDDRIAQLKKKASDFKPKSAAFWKDGEHVPFLFLARAFDFISQEKGRIATTEL
LCNVFRTVMATTPGDLISVVYLSANKVAPSHEGVELGLGDSALNKVLAEAYGRSEAQIKK
QTEELGDLGLVAKASRSSQSLMFKPKPLTVARVFDTFRTIAKESGKDSQDKKRRHIRELL
IAATDCEPQYLIRLLQSKLRIGLAEQTLLVALGHAAVYSEEQSTPSSQIQSRLEEAAKIV
KQVYSVVPNYDRIVSALLGDGVWKLSETCCFTLGVPVGPMLAKPTKGVSEILDKFQGMEF
TCEYKYDGERAQIHYMEDGSVEIYSRNAERNTAKFPDVVLAVTRVKKSSVKSFVLDCEVV
AYDREKQKIQPFQILSTRARKGVTLSDVKVDVCIFAFDLLYINGRPLLPEQLNIRRQHLY
DSFEIEPGVFEFAKAITSDDLEVIQKFLEDAVESSSEGLIVKTLNRDATYEPSKRSHNWL
KLKKDYMDSLGDSLDLVPIAAFHGRGKRTGFYGAFLLACYDDKNEEFQSICKIGTGFSEA
MLEECSNSVRTKVIPKPKPYFRCGDTINPDVWFEPSEVWEVKAADLTISPVHCAGIGVVD
PNKGISLRFPRLVRVRKDKIPEQATSSDQVADMYRAQKHNGANNQDEDENEDDYGSQSKA
H
NT seq 1986 nt   +upstreamnt  +downstreamnt
atgaaagatcggtctctcagtttggacgaccgcattgcccaattgaagaagaaggcgtcg
gattttaaaccgaaatccgctgcattctggaaagatggagaacacgtcccatttctgttt
cttgctcgtgcgtttgattttattagtcaagagaagggtcgaattgccactacggagctt
ctctgtaatgttttccggactgtgatggctactaccccaggtgatttgatttctgttgtt
tatctttccgcgaataaggttgctccatctcacgagggcgttgagcttgggcttggagat
tctgccctaaataaagttctcgctgaagcgtatggaaggagtgaagcacaaatcaagaaa
cagacagaggaactgggagacttgggtcttgttgcaaaagcaagtcgttcatctcaaagt
ttgatgttcaagcctaaacctttaactgttgcaagggtttttgatacatttcgcaccatt
gctaaggaatctgggaaggacagtcaagataagaaaagaagacatatcagggagcttctt
attgcagctactgattgtgaacctcaatatttaattcgtctattgcagtcaaagctacga
attggtttggcagagcagactctcctggtggctctgggacatgctgccgtttattctgaa
gaacaatctacaccttcttcacaaattcaatctcgtcttgaagaggctgccaaaattgtc
aaacaagtatattctgtagttcctaattatgacagaattgtatccgctcttcttggtgac
ggtgtatggaagctttcagagacatgttgctttacattgggtgttccagttggacctatg
ttagctaaaccaaccaaaggggtatcagagattttggataaattccagggtatggaattc
acttgtgaatacaagtatgatggagaacgtgcacagatacattacatggaggatggttct
gttgagatatatagtcgaaatgcggaacggaatacggcaaagtttcctgatgttgtcctt
gcagttacaagagtgaagaagtcctctgtgaaatcatttgttctcgactgtgaagttgtt
gcttatgaccgtgaaaaacagaagattcaacctttccagatcctcagtactcgtgctcgt
aaaggggtgaccttgagtgacgtgaaagtcgatgtttgcatctttgcttttgatttattg
tacatcaatggacggccattacttccagagcagcttaatattcgtagacagcatctttat
gattcatttgagatagaaccaggagtttttgagtttgctaaagcaataacatcagatgat
cttgaagtaatacaaaagtttctcgaagatgctgttgaatccagttctgaagggctgatt
gtcaaaacattaaatagagatgctacctatgagccttcaaaacggtcccacaattggctg
aaattgaaaaaggattacatggacagccttggtgactcattagatttagtacctattgct
gcattccatggccgtgggaaacgtacaggtttctatggtgcctttctccttgcttgttat
gatgacaagaatgaagaatttcaaagtatttgcaaaataggcaccggattttctgaagca
atgctcgaggagtgttccaatagtgttcgtactaaagtgatcccaaaacccaagccatat
tttcggtgtggagatacaatcaatccagatgtgtggtttgaaccatctgaggtttgggag
gtgaaagctgcggatttgaccattagtcctgttcattgtgctggaattggtgttgtggat
ccaaataagggcatctctctccgatttccacgtctagttcgtgtgcgaaaagataaaatc
cctgagcaagctacatcatctgatcaggttgctgatatgtatcgtgctcaaaagcataat
ggtgctaacaatcaggatgaagatgagaacgaagatgattatggtagccaatcaaaggca
cactga

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