Telopea speciosissima (New South Wales waratah): 122657882
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Entry
122657882 CDS
T07910
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122657882
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tss03041
]
122657882
Enzymes [BR:
tss01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
122657882
Spliceosome [BR:
tss03041
]
Complex A
U2 snRNP components
U2 related factors
122657882
Complex B
122657882
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
122657882
NCBI-ProteinID:
XP_043708611
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All DBs
Position
4:complement(7057736..7062916)
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AA seq
1179 aa
AA seq
DB search
MEEVKRKSRREDSDRKEDSKKSDRDRDRDREKDKERKEDKYKDKEKVRDRDSEKKDRESR
RSERERSVDDRHREKYRDKYREKDRGRNRDEERERIKEKVKDREREKDRDDRERERGRDK
DRESREREREREREREDRDREREREREREDREKEREKEKERDRERERTREREREREREER
EREKEERERERTREREKRRELDRDEDRDGDDSRDHERKRSRRDDDYRERERERSSRSDRH
RDDSDDSRRKRSEDDSENKEKRSREEDLEEEQRKLDEEMDKRRRRVQEWQELKRKKEESE
REKLGETNVEEPKSGKNWTLEGESDDEDAVPTVKSEKDTDMDEDGKPAGEGGDAMMVDSE
NGTAVAGTQNGSEGANGEEEIDPLDAFMNSMVIPEVKKLNGSESSSKADDEKSDPKKDQK
DGQSNGVQSKKGTNKAMGRIIPGEDSDSDYSDIENDEAPVEDEDDDEFMKRVKKTKVEKL
SIVDHSKIQYPPFRKNFYIEVKEISKMTAEEVADYRKQLELKIHGKDVPKPVRTWNQTGL
TSKILDTIKKLNYDKPMPIQAQALPTIMSGRDCIGIAKTGSGKTLGFVLPMLRHIKDQPP
VVPGDGPIGLIMAPTRELVQQIHSDIRKFTKMLGVNCVPVYGGSGVAQQISELKRGAEIV
VCTPGRMIDILCTSSGKITNLRRVTYLVLDEADRMFDMGFEPQITRIVQNTRPDRQTVLF
SATFPRQVEILARRVLNKPVEIQVGGRSVVNKDITQLVEMRQEGERFLRLLELLGEWYEK
GKILIFVQSQEKCDSLFRDLLKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLIATSIA
ARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYSPDLVKALE
LSEQAVPADLKAIADGFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAREYG
FEEDKSDSDSDDDGIRKAGGDISQQAQAALAAISAASRVSVASMATPVSAAPLLPNGGLQ
PVTLPSVLGLGIPGTAAVVPGVALPIGPGDGAARAAAIAAAMNLQHNLAKIQADALPEHY
EAELEINDFPQNARWKVTHKETLVPISEWTGAAITTRGQYYPPGKVPGPGERKLYLFIEG
PTEQSVKRAKVEVKRVLEDITNQSLSLPGTAQPGRYSVL
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagtgaaacgcaaatccaggagagaagattctgacaggaaggaggattccaag
aagagcgatcgggaccgggatcgtgacagagagaaggacaaagaaaggaaggaagacaag
tacaaagataaggagaaggtaagggatcgtgattccgagaagaaggaccgagaaagtcgg
cgctcagagagggagaggagcgtcgatgacaggcatagggagaagtacagggacaagtac
agggagaaggatagaggtcggaatcgagatgaggaaagggagaggataaaagagaaggtg
aaagatagagagagggagaaagatcgagatgatagagagagggagaggggaagggacaaa
gatagggaaagcagagagcgggagagggaacgggagagagaaagggaagacagagacagg
gagcgggagagggaaagagaaagggaggacagagagaaggagcgtgagaaagagaaagag
agagaccgagagagggagcggacaagggagagggaaagagaaagggaaagggaggaaaga
gagcgggagaaggaggagagggaaagggagaggactagggagagggaaaagcgtagggaa
ctggatagagatgaggacagagatggtgatgatagcagggaccatgaaagaaagcggtct
aggagggatgatgattatagggagagagaacgggaaaggagcagcagatcagacaggcat
agggatgacagtgacgatagccgaaggaaaaggagtgaggatgattctgagaacaaagag
aagagaagtcgggaagaagatttagaggaagaacagaggaaacttgatgaggaaatggac
aagaggaggaggagggttcaggaatggcaggaattgaaaaggaagaaggaagaatctgag
agagaaaagctgggagaaacaaacgttgaagaaccaaaatctggtaagaactggacccta
gaaggtgagtctgatgacgaagatgctgttcctaccgtcaaatcagagaaggatacagac
atggacgaagatggtaagcctgctggtgaaggtggagatgctatgatggttgattctgaa
aatggaactgctgtagctggtactcaaaatggaagtgaaggagccaatggggaggaggaa
atagacccattggatgctttcatgaattcaatggtaatacctgaggtcaagaagctgaat
ggctctgaaagttcctctaaagcggatgatgaaaagtctgatcccaagaaggatcagaaa
gatgggcaaagtaatggggttcaatccaagaagggtacaaataaagctatgggccgaatt
atccctggtgaggactctgattctgattatagtgatattgagaatgacgaagctccagtt
gaagatgaagatgacgatgagttcatgaaaagggtgaagaagactaaggttgaaaaatta
tctatagtcgaccactctaagatccaatatccccccttcaggaaaaatttctatattgaa
gtgaaggagatctcaaagatgacagctgaggaggttgctgattacaggaaacaactggag
ttgaagattcatgggaaagatgtgccaaagcctgttaggacatggaatcaaactggattg
acaagtaaaatactagatactattaaaaaactgaactatgataagccgatgcccatccaa
gctcaggcactgccaacaattatgagtggtcgggactgcataggtatcgcaaaaactggt
tctggcaagacgctgggttttgttttgccaatgttgaggcatatcaaggatcagccacct
gttgttcctggagacgggcctattgggcttataatggctcctaccagagagcttgtccag
cagatccacagtgatatcaggaaatttactaagatgcttggtgttaattgtgtccctgta
tatggtggctctggggttgctcagcagataagtgagttaaagcggggtgctgagattgtt
gtttgtactccaggtaggatgatagatatactttgtaccagtagtggaaagattactaac
cttcgaagggttacgtatctagttttagatgaagcagatagaatgtttgacatgggtttt
gaacctcagatcactcggattgtacaaaatacccgaccagaccgacagactgtacttttt
tctgctacttttcctcgtcaggttgagatactggcccgcagagtattaaataagcctgtt
gaaattcaggttgggggaagaagtgtagtgaacaaggacataacacagttagttgagatg
agacaagagggtgagaggttcctgagactgttagaactactgggagaatggtatgagaaa
ggaaagatattgatatttgtccagtcacaagaaaaatgtgattctttatttagggacttg
ctaaagcatggttacccttgcctttcgcttcatggggctaaggatcagactgatcgtgag
tcaaccatttctgacttcaagagcaatgtttgcaatcttttgattgcaactagtattgct
gctaggggtttggatgtgaaggagcttgagctggtaatcaattttgatgtcccaaaccac
tacgaagactatgttcatcgtgttggtcggacggggcgagctggccggaaaggctgtgct
attacctttatctctgaagaggatgcaagatattctccagatcttgtaaaagctttggaa
ctctcggagcaggctgttcctgctgatctgaaggctattgctgatggattcatggcaaaa
gtgaatcagggacttgagcaagctcatgggactggttatggggggagtggtttcaagttc
aatgaagaggaagatgaagtaaggaaagcagctaagaaagcacaggcaagagaatatggt
ttcgaggaagacaagtcagattcagactctgacgatgatgggattcggaaggccggaggt
gatatctctcagcaagcacaagctgcacttgctgccataagtgcagcttccagggtaagt
gtagcttcaatggcaaccccggtctcagcagccccattgttgccaaatggaggactacaa
cctgtgactctccctagtgtccttggtttgggtataccaggcactgcagcagtagtacct
ggggtggctctgcccattgggccaggtgatggagcagctcgagcagcggcaatagcagct
gcgatgaatctgcagcataatcttgcgaaaatccaggctgatgcactgcctgaacactat
gaagcagagttagagatcaatgatttccctcagaatgctcgttggaaggtgacccacaag
gaaactttagttccaatctcagaatggactggagctgctataactaccagggggcaatat
tatccaccaggtaaggttccaggacctggggagcggaagctttatttgttcattgaaggt
cctactgaacagtctgtaaagagggcaaaagtagaagtgaagcgtgttctggaggacatt
acgaatcagtcattgtcacttcctggtactgcccagccgggcaggtactctgtcctgtga
DBGET
integrated database retrieval system
