Telopea speciosissima (New South Wales waratah): 122661644
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Entry
122661644 CDS
T07910
Name
(RefSeq) SWI/SNF complex subunit SWI3D
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122661644
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tss03021
]
122661644
03036 Chromosome and associated proteins [BR:
tss03036
]
122661644
Transcription machinery [BR:
tss03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
122661644
Chromosome and associated proteins [BR:
tss03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
122661644
PBAF complex
122661644
GBAF(ncBAF) complex
122661644
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
122661644
NCBI-ProteinID:
XP_043713043
LinkDB
All DBs
Position
5:complement(8909012..8928573)
Genome browser
AA seq
1021 aa
AA seq
DB search
MEKVREAGATAANVATAGASSSITAANSYTSTTKTPELQVVEQAPKRRVGAPKRKANNFN
TSGISSTPSKRLAKERPLVPLPPKHNGPCTRARQSPNKLALAAAAAAAVTSGPQKPVESG
LPLVSSSAGEGASAAEESNAAKEYWQALEPVMDAEFEVVRSRDANAHVVPTHAGWFSWTK
IHPLEERSMPSFFNGKSEKRTPDIYMGIRNLIMKKFHADPQTAVELKDLSELSVGEPDAR
QEVMEFLDYWGLINFHPFPPSDSVMANAEVDGIVNTSLLEKLYRFDTVQFRSSGPRRTDV
SAPVVPPHLFPETSIVDDLVRPDGTGVEYHCNSCSADCSRKRYHCQKQADFDLCSECYND
GKFDSGMSPADFILMEPAEAPGVSGGSWTDQETLLLLEALELYGENWNEIAEHVATKTKA
QCILHFVQMPIEDMFFEHTDNFDASSQGNTNPGSTNDNTSALKDVPETTESKANEVSKCT
ANEDSISAANEDSKSAVNEESKSTGDEESKITVNEESKSTANESKSAANEEQSLSLHMDP
SKSKDGNQVKVASDLDVNRALKALKEAFQAVSSLPEPEGSLSFAEAGNPVMALAAFLARL
VEPNVAAASVHSLLKAISEDSPGIQLATRHCFLLEDPSDDMKEPRVSESAVVEMVDVEAQ
NKNQEVEQQGEEAHTSNLDGSDSSKDSSVKKIENVIPKEESFASPNEGSTEKPCVSKLPD
DVTTEERVTTSSPDKVSSSTQQEVGPTTVKESSEPARPGDEKSNPMKDDLALLAEDPPSS
VNKSVDVGSVVEATQCPEVPKGVDRESDPIPSEEKEGETQRPVAPNSMVHSGTDGKTGDN
TDQDKKKLLDCKSENCNLMETKDHHYVDKVKRAAITAISAAAVKAKLLAKQEEDQIRQLT
TFLIEKQVHKLETKLAFFSEMEGMIIKFREQMDRSRQRLYQERAQIIATRLGLPASSSRA
LPPSYPNNKIPMGYSNSVPKPLPSMSSSKPSVKRTMMPSAPLLSNSSIPNTVTGSLSHPS
N
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggtccgcgaagccggagctacggcagctaatgtcgccaccgccggcgccagc
agcagcatcaccgccgcaaacagttatacttcgacgacgaaaacgccagaattgcaggtc
gtagaacaagcacctaaaaggagagttggtgcacccaaaagaaaagctaacaatttcaat
acatctggcatctcttcaacgccttcgaagcgccttgcaaaggagagacccctagtacca
ctgcctcctaaacataatggcccttgtacccgcgctcgacaatctccaaacaagcttgcc
ttggccgccgcggctgcagctgctgttacttccggcccgcagaagccggtggagtcaggg
cttcctcttgtttcgtcttctgctggagaaggtgcttctgctgccgaagaatcgaacgcc
gctaaagagtactggcaggcgttagagcctgtcatggacgccgagttcgaagttgtcaga
tcccgtgacgctaacgctcatgtcgtacctacgcatgcagggtggttttcatggaccaaa
attcatcctctggaggagcgttccatgccttcgttcttcaatggtaagtctgagaagcgg
acgcctgatatctatatgggaatacgcaatctcattatgaagaagtttcatgcggatcct
cagacagctgtcgagttgaaagatctgtcagagttatctgttggagagccggatgcaagg
caagaggtcatggagttcttagattactggggtttaattaacttccatccctttccaccg
tcagattctgtcatggccaatgccgaggttgatggaattgtaaacacatctttgcttgag
aaactctatcggtttgacacagttcagtttcgttcatcgggtccgaggaggacagatgtt
tctgcacctgtcgtgccacctcacttatttcccgaaacttcaattgttgacgatttggtg
aggccagacggtacgggagtagagtaccattgcaactcatgctctgcagattgttctcgc
aagcgctaccattgccagaagcaggctgattttgatttatgctctgagtgttataatgat
gggaagtttgactctggcatgtccccagctgatttcattcttatggaacctgctgaggcc
cctggtgtaagtgggggtagttggacagatcaggagactctcctgcttctggaagccctg
gagctttatggagaaaactggaatgagattgctgaacatgtcgccacaaaaaccaaagct
caatgtatcttgcattttgttcaaatgccaatcgaggatatgttttttgagcatacagat
aattttgatgccagtagccaaggaaatacaaatccaggttcaaccaatgataatacatct
gctttaaaggatgttccagaaacaacagagagcaaggccaatgaggtgagcaaatgcaca
gccaatgaggacagcatcagcgcagccaatgaagacagcaaaagcgccgtcaatgaggag
agcaaaagcaccggcgatgaggagagcaaaatcacagtcaatgaggagagtaaaagcaca
gccaatgagagcaaaagtgcagctaacgaggagcaatccctttctttacatatggatccg
tcaaagtcaaaagatggaaatcaagtaaaggttgcttcagatttggatgttaaccgtgca
ctaaaagccttgaaggaagcgttccaggctgttagctctcttcctgagcctgaaggttca
ctttcattcgctgaagcagggaaccctgtaatggcattggcagcattcctagcacgcctg
gtggaacctaatgttgctgctgcttcagtccacagtttactaaaggctatttctgaggat
tctcctggcattcagctagctacaaggcactgttttcttcttgaagatccatcagatgac
atgaaggaaccccgtgtctctgagagtgctgttgttgaaatggttgatgtggaggcccaa
aataaaaaccaggaagtggaacaacagggggaagaagcccacacgtcaaatttggatgga
agtgattcatctaaggattcttctgtcaagaaaattgagaatgttatcccgaaagaggag
tcatttgcttctcctaatgagggttcgacagagaagccatgtgtttcaaagttgccggat
gatgtaacaactgaggagagggtcaccacaagttctccggataaggtttcatcaagtact
cagcaagaggttggacctactactgtgaaagaatcaagtgagccggctaggcccggggat
gaaaaatcaaacccgatgaaggacgatttggctttgctggcggaggacccaccaagttct
gttaataaatcagttgacgtaggttcagtggtagaggccactcaatgtccagaggtgcca
aagggagttgatagggagtctgatccaattccttctgaagagaaggagggagagactcag
cgaccagttgcacctaattcaatggttcacagtggaacggatggaaaaactggagataat
acagatcaggataagaaaaaactgttagattgtaaaagtgagaactgtaacttgatggaa
actaaagatcaccattatgtagataaagtgaagcgtgctgcaataactgctatctcggct
gcagctgtgaaggcaaagcttcttgccaagcaagaagaagaccaaatacgacagcttact
acctttttgattgagaagcaggtgcataagttggagactaagttggctttcttttctgag
atggaaggcatgataataaaattcagggaacaaatggatcggtcaaggcagaggctttac
caagagcgggcccagataattgccacacgactgggattacctgcttcctcgtcgagagca
ttaccaccgtcatatcctaacaacaaaatcccaatgggctattcaaactcggtgccaaag
ccattaccaagcatgagctcttcaaagccttcagttaaaagaaccatgatgccttcagct
cctctcctgtcaaactcatctattcccaatactgttacaggaagtttaagtcatccatca
aactag
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