Telopea speciosissima (New South Wales waratah): 122661957
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Entry
122661957 CDS
T07910
Name
(RefSeq) histone deacetylase 9 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03082
ATP-dependent chromatin remodeling
tss03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
122661957
03083 Polycomb repressive complex
122661957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tss03036
]
122661957
Enzymes [BR:
tss01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
122661957
Chromosome and associated proteins [BR:
tss03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
122661957
HDAC complexes
Sin3A-HDAC complex
122661957
BRAF-HDAC complex
122661957
REST complex
122661957
SHIP complex
122661957
MiDAC complex
122661957
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
122661957
Heterochromatin formation proteins
Other heterochromatin formation proteins
122661957
Chromatin remodeling factors
NuRD complex
122661957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
122661957
NCBI-ProteinID:
XP_043713416
LinkDB
All DBs
Position
1:23312139..23347651
Genome browser
AA seq
430 aa
AA seq
DB search
MHSKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDTQHLFANELVKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL
NNKLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDMFFPGTGDVKEIGEKEGKFYAINVPLKDGIDDASFTRLFKT
IISKVVETYLPGAIVLQCGADSLAGDRLGCFNLSIDGHSECVRFVKKFNLPLLVTGGGGY
TKENVARCWAVETGVLLDTELPNEIPDNEYIKYFAPDYSLKIPSGNLENMNSKSYLGTIK
MQVMESLRCIQHAPSVQMQEVPPDFYIPDFDEDEQNPDERVDQHTQDKQIQRDDEYYEGD
NDNDHNMDDA
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcattcgaaggacaggatttcctatttctacgatggagatgtaggcagtgtttacttt
ggtccaaatcatcctatgaagcctcatcgtctttgtatgacacatcatcttgtcctctcc
tatgacctccacaagaagatggaaatctatcggcctcacaaagcataccctgttgagctt
gctcagtttcattctgcggattatgttgagttcttgcaccggatcactcctgacacccaa
catctgtttgctaatgaattggtaaaatataatcttggagaagactgcccagtatttgag
aacttgtttgaattttgtcaaatttatgctggtggaacgattgatgctgcacgcagattg
aacaataagctatgcgacattgctataaattgggctggtggattgcaccacgcaaagaag
tgtgaagcttctggattttgttacatcaatgacttggtcctagggattctggaactcctc
aagtatcacgccagggtcctatatattgatatagatgtacatcatggtgatggagttgaa
gaagccttctatttcacagacagggtgatgactgttagttttcataagtatggggatatg
ttctttccgggaaccggtgatgttaaggaaattggagagaaagaaggaaaattttatgcc
ataaatgtcccattgaaggatggaatagatgatgccagctttactcgacttttcaaaaca
attatttccaaggttgttgagacatatctaccaggtgctatagttctccaatgtggggct
gattcacttgctggggaccgcttgggctgcttcaatctctccatcgatgggcattctgag
tgtgtaagattcgtgaaaaaattcaatttaccgttgttggttactggaggtggaggatac
acaaaagagaatgttgctagatgctgggctgttgaaacgggggttcttctggatactgag
cttcccaatgaaatcccagataatgagtacatcaaatattttgctcctgattattcatta
aagattccgagtgggaacctagaaaacatgaacagcaaatcttaccttggtacgataaaa
atgcaagtcatggaaagtctgcgttgcattcagcatgcccctagtgtacaaatgcaagag
gttccacctgatttctacatccctgattttgatgaagatgagcagaacccagatgaaaga
gttgatcagcacacccaagacaagcaaatccagcgagatgatgaatactatgaaggtgat
aatgacaatgatcacaacatggatgatgcttga
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