Telopea speciosissima (New South Wales waratah): 122668125
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Entry
122668125 CDS
T07910
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
tss
Telopea speciosissima (New South Wales waratah)
Pathway
tss03013
Nucleocytoplasmic transport
tss03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tss00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
122668125
03015 mRNA surveillance pathway
122668125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tss03019
]
122668125
Messenger RNA biogenesis [BR:
tss03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
122668125
mRNA cycle factors
P-body specific factors
122668125
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
TMEM131_like
Motif
Other DBs
NCBI-GeneID:
122668125
NCBI-ProteinID:
XP_043720634
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Position
7:complement(14595574..14611580)
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AA seq
580 aa
AA seq
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MKDPSDRTKVVLRHLPPVLSQSALMEQIDGNFAGRYKWFCFRPGKNSQKNPRYSRAYIDF
KRPEDVVEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRVPKSWSKKDGREGTISKDPEYLE
FLELISKPVENLPSAEIQLERREAERAGAAKESPIVTPLMDYVRQKRAAKSGSQRSSSNG
KLSRRSGASHGSSSSSSTKRGSEKRKVSTSVYVLRDNAKSNSGKDKSTYILVRRREDQQL
VEKSASAAAATGTEVFEDESAHGSDGVTSGVNTVADIGKKKVLLKGKEREIFQNLRCEAG
GRMIKSILSNKEPRQSQLSATGHSDQQIQTLNVEKDKRPPRPMNIRSVLKDHVSSVSQMP
CGSDCDTKKALDDKVVRNDVHGFGSASEKQEKRTRNKDRPDRGIWTPLRRSDGSHASDES
LSSPSSLPTQLLSDSLDGMNITQNVGVQKIGDDVEDSDSSHKSAFSAGKHRNQDASIHSS
RLGRGGNSSAYDIPGSHGEVKADVTFAGKSEVKTLGSGRNNFSSVENGSHRHAGRRGPGH
GGKDVDGSMHLAEAKPSKRGLSGYGSHEKQVWVQKSGSGS
NT seq
1743 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatccgtccgatcgaacgaaggtggtgcttcggcacttgcccccggtgctgtcc
cagtcggcgctcatggagcaaatcgatggcaacttcgctggtcgttacaagtggttttgt
ttccgtcccgggaagaacagccagaagaatccgagatattctcgagcttatattgatttc
aagcggccagaagatgtggttgagttcgctgagttttttgatggacacgtgtttgttaat
gagaagggtactcagtttaaaacgatagtggaatatgccccttcgcaacgtgttccaaag
tcttggtctaaaaaagatggtcgtgaaggaactatatccaaagatcctgagtatctggag
ttccttgagcttatttcaaagcctgttgagaatcttcccagtgccgaaatacaactggaa
agaagagaagcagaacgagctggtgctgcaaaagagtctcccattgttacacctctgatg
gattatgttcgtcagaaaagagctgctaagagtggatctcagaggtcatcatctaatgga
aagcttagcagaagatcaggagcctcacatggcagttctagttcatcttcaaccaaaaga
ggttctgaaaagagaaaagtctccacttcagtgtatgttttaagggacaatgcaaagagc
aatagtggcaaggacaagtcaacttacattttagtgcgtaggcgagaagatcaacagctt
gtggagaaatctgcttctgcagctgctgcaactggaacagaagtatttgaagatgagagc
gcccatgggagtgatggagttacatcaggagtgaatactgttgctgatattgggaagaaa
aaggtactcctgaaagggaaagaacgtgagatttttcagaatctgcggtgtgaggctggt
gggaggatgatcaaaagcatactttcaaacaaggaaccacgtcagagtcaattatctgca
acaggccactctgatcagcaaatccagaccttgaatgtagagaaggacaaacggccacct
cgtcccatgaacattcgttcagttttgaaggaccatgtttctagtgtttcacagatgccg
tgtggttctgattgtgatacaaagaaggctcttgatgataaggttgtcaggaatgatgtg
catggatttggttctgccagtgagaaacaagaaaaacgtaccagaaataaggatagacct
gatcgtggtatttggacacctcttcgtcgttcagatggatcacatgcaagtgatgagtcc
ctatcatcaccctcttctctgcctacacagttactgtcagattctttagatggcatgaat
attactcaaaatgtgggtgttcaaaaaattggggatgatgtagaggactccgattctagt
cataaatcagcattttctgctgggaaacatcgtaatcaggatgcatctattcacagttcc
cgactagggcgtggtggtaattcatctgcctatgatattccaggaagtcacggagaagta
aaagctgatgtcacttttgccggtaaatctgaagttaagacccttggaagtggacgaaac
aatttttcttctgtagagaatggatcccaccggcatgctggtcgccgtggacctggacat
gggggaaaggatgttgatggctctatgcatcttgctgaggcaaagccgtccaaaagaggt
ctttctggctatggttcccatgagaagcaagtgtgggttcagaagtcaggttcaggttca
tag
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