Trachemys scripta elegans (red-eared slider): 117870806
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Entry
117870806 CDS
T07347
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
117870806 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tst03400
]
117870806 (LIG4)
Enzymes [BR:
tst01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117870806 (LIG4)
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
117870806 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
BRCT_2
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Ribosomal_S5_C
RTT107_BRCT_5
Peptidase_M4
Motif
Other DBs
NCBI-GeneID:
117870806
NCBI-ProteinID:
XP_034614069
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All DBs
Position
1:242568780..242577634
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AA seq
914 aa
AA seq
DB search
MSSTPTSQSSPKRTVASVVPFADLCSILERIQKCKSRPEKTKYFKEFLDSWRKFHDALHK
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDALKLLNYRTP
TGSHGDAGDFAMIAYFVLKPRCPKQGRLTIQQVNELLDSVASNNAAKRKDLVKKSLLQLI
TQSSALEQKWLIRMIIKDLKLGVSQQTIFSLFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSIMLFSAFKPMLAAIANVQQIEKQMNHQSFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYYTQQFGASPLEGSLTPFIHNVFKNSIQNCILDGEMMAYNPNTQTFMQKGSKFDIKKM
ADDSDLQTCFCVFDVLMVNDQKLGHEILSKRYEILNELFTPITGRIHIVHKTQASTRKEV
VDALNEAIDNREEGIMIKDPMSIYKPDKRGEGWLKIKPEYVNGLMDELDLLIIGGYWGKG
LRGGMMSHFLCAVAETSPPGEKPSVFHSICRVGSGYTMKELYDLGLKLAKHWKPYRKRDP
PCNILCGTEKPEVYIEPCNSVIVQIKAAEIVTSDMYKTDCTLRFPRIEKIREDKEWHECM
TLDFLEQLRGKASGKLASKHLDMGDDEPQEKKRKTVPKVKKIIGIMDNFKAPDLSNVNKI
SNIFEDLEFCVMTGTENHSKSELESKVAESGGNVVQNPGPDTYCVIAGIENVRVKNIISS
NKHDVVRAEWLLQCFEMKIFVPWQPAFMIHMSPDTKQHFACEYDRYGDSYTADTDVTQLK
EVFSRINNKNDEKMPLDMIADLEERYLWNSSPLGMFRQNTIYLDLYAVVNDPSTKTHGTM
LSIRALELRFHGAKIVSQLKEGVSHVIMGEDHTHVKEIKALRRTFEKKFKILSELWVTDS
IKEGKLQNENPYLI
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccacacctacttctcaatcttcccctaaacgaactgtggcatcagtagttcct
tttgcagatctgtgttcaattttggaacgaatacagaaatgtaaatcccggccagagaaa
accaagtattttaaggaatttttagattcatggaggaaatttcatgatgctcttcataaa
aaagagaaagatgtcacagactctttttatccagcaatgcgacttattcttccacaactg
gaaagagagagaatggcttatggaattaaagaaaccatgcttgctaagctctatattgaa
ctgctcaatttacccaaagaaggaaaagatgccctaaaactcttaaattatagaacacct
actggctcacatggagatgctggagactttgcaatgattgcctattttgtattgaaaccg
aggtgcccaaaacaaggcagactgaccatacaacaggtgaatgagctgctggattcagtt
gctagtaataatgctgccaaaaggaaggacctagtaaagaaaagtcttcttcagttaata
actcagagctcagcacttgaacagaagtggctgatccggatgattataaaggatctaaaa
cttggtgttagtcagcaaaccatattttcccttttccatcctgatgctgctgagttacac
aatgtcacaactgacctggagaaagtttgcagacaactgcatgacccttctgtgtcactc
agtgatgtttccatcatgttgttttctgcctttaaacctatgcttgctgctattgctaat
gtccagcaaattgagaaacaaatgaaccaccaaagtttttacatagaaactaaactagat
ggtgaacgtatgcagatgcacaaagatggagatgtatacaagtatttctcccgtaatggg
tttgattattatactcagcagtttggtgcttctcccctcgaaggttcattaactccattt
attcataatgtgtttaaaaatagtatacaaaactgcattcttgatggtgaaatgatggcc
tacaatcccaatacacaaacttttatgcagaagggaagcaaatttgacataaaaaaaatg
gcagatgattctgatctgcagacatgcttttgtgtgtttgatgtattaatggttaatgat
cagaagttgggtcatgagatactaagcaaaagatatgagattctaaatgagttgtttaca
ccaataacaggcagaatacatatagttcataaaacacaggctagcaccaggaaagaagta
gttgatgctctaaatgaagcaatagataacagagaagaaggaatcatgataaaagatcct
atgtccatttacaagccagacaaacgtggggaaggctggttaaaaatcaaaccagagtat
gtcaatggtctcatggatgaactagacctattaattattggtggttactggggaaaaggt
ttgcgtggtggcatgatgtctcattttttgtgtgctgttgctgagacttcccctcctggt
gaaaaaccatctgtctttcattctatttgtcgtgttggttctggttacactatgaaggag
ctatatgatcttggtttgaaattggccaaacactggaaaccttaccgtaaaagagatcct
ccttgtaatattttatgtggaactgagaagcctgaagtctacatcgagccttgtaactca
gtcatagttcagattaaggcagcggagattgttactagtgatatgtacaaaactgattgc
actttgcgattccctcgaattgagaaaataagagaggacaaagagtggcatgaatgtatg
actttggatttcttagaacagctcagaggtaaagcatcagggaagctagcatctaagcac
cttgatatgggtgatgatgaaccacaagaaaagaaacggaaaactgtaccaaaggttaag
aaaataattggaatcatggataattttaaagcccctgatctttccaatgtaaataagatt
tctaatatatttgaagatcttgagttttgtgttatgactggaacagaaaaccattcaaaa
tctgaactggaaagtaaagtagcagaaagtggcggtaatgtggtacaaaaccctggacca
gacacttactgtgttattgcaggaattgagaatgtcagagtaaaaaatataatatcttcc
aacaagcatgatgttgtgagagcagagtggcttttacagtgttttgaaatgaaaatattt
gtaccatggcagcctgccttcatgattcacatgtctccagatacaaaacaacattttgca
tgtgaatacgatcgttatggtgacagctacacagcagatacagatgtgacccaactaaag
gaagtattctcaagaattaataataaaaatgatgagaagatgcctttggacatgattgct
gacttagaagaacgttatttgtggaatagctctccactcggtatgttcaggcaaaatacc
atttatctggacctttatgctgttgttaatgaccccagtaccaagacccatggaacaatg
ctatcaattagagctttggagctccgttttcatggagcaaaaatagtctcacagctaaag
gagggtgtatcccatgtaattatgggagaagatcatacccatgtgaaagagataaaagca
cttaggagaacatttgagaaaaaatttaaaatcctatctgagctgtgggtaacagattca
ataaaggaggggaagttacagaatgaaaatccatacctaatttaa
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